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. 2020 Jul 20;5(3):2890-2892.
doi: 10.1080/23802359.2020.1791011.

The complete chloroplast genome of Scapania ampliata Steph., 1897 (Scapaniaceae, Jungermanniales)

Seung Se Choi  1 , Woochan Kwon  2 , Jongsun Park  2
Affiliations

The complete chloroplast genome of Scapania ampliata Steph., 1897 (Scapaniaceae, Jungermanniales)

Seung Se Choi et al. Mitochondrial DNA B Resour. .

Abstract

We completed chloroplast genome of Scapania ampliata Steph., presenting distinct morphological features including yellowish brown, one-celled gemmae, and decurrent dorsal lobe. It is 118,026 bp long and has four subregions: 80,850 bp of large single copy (LSC) and 19,436 bp of small single copy (SSC) regions are separated by 8,870 bp of inverted repeat (IR) regions including 130 genes (86 protein-coding genes, 8 ribosomal RNAs, and 36 transfer RNAs). The overall guanine cytosine (GC) content is 34.0% and those in the LSC, SSC, and IR regions are 31.9%, 31.0%, and 46.3%, respectively. Phylogenetic trees show S. ampliata is clustered with Scapania ciliata.

Keywords: Jungermanniales; Scapania ampliata; Scapaniaceae; chloroplast genome.

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Conflict of interest statement

No potential conflict of interest was reported by the author(s).

Figures

Figure 1.
Figure 1.
Neighbor joining (bootstrap repeat is 10,000), maximum likelihood (bootstrap repeat is 1,000), and Bayesian Inference phylogenetic trees (Number of generations is 1,100,000) of 12 complete chloroplast genomes: Scapania ampliata (MT644123 in this study), Scapania ciliata (NC_043786), Bazzania praerupta (NC_043785), Calypogeia fissa (NC_043787), Gymnomitrion concinnatum (NC_040133), Heteroscyphus argutus (NC_043788), Plagiochila chinensis (NC_043784), Schistochila macrodonta (NC_043779), Calypogeia fissa (MK293995), Calypogeia integristipula (MK293996), Calypogeia muelleriana (MK294000), and Ptilidium pulcherrimum (NC_015402) as an outgroup. Phylogenetic tree was drawn based on the maximum likelihood phylogenetic tree. Family names were displayed with grey bars in the right side of the tree. The numbers above branches indicate bootstrap support values of maximum likelihood, neighbor joining, and Bayesian Inference phylogenetic trees, respectively.
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References

    1. Bakalin VA. 2010. Hepaticae of the Kuril Islands (northwestern Pacific): a transoceanic route from circumboreal to East Asian flora. Annales Botanici Fennici. 47(2):81–105.
    1. Bakalin V, Vilnet A, Ma WZ, Klimova K.. 2019. The differentiation and speciation of Scapania javanica and S. undulata complexes in the Eastern Sino-Himalayas and perimeters for Scapania Sect. Stephania (Scapaniaceae, Hepaticae). Phytotaxa. Phytotaxa. 400(3):123–144.
    1. Choi SS, Bakalin VA, Sun B-Y.. 2012. Scapania and Macrodiplophyllum in the Russian Far East. Bot Pac. 1 (1):31–95.
    1. Heinrichs J, Bombosch A, Feldberg K, Kreier H-P, Hentschel J, Eckstein J, Long D, Zhu R-L, Schäfer-Verwimp A, Schmidt AR, et al. 2012. A phylogeny of the northern temperate leafy liverwort genus Scapania (Scapaniaceae, Jungermanniales). Mol Phylogenet Evol. 62(3):973–985. - PubMed
    1. Huelsenbeck JP, Ronquist F.. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 17(8):754–755. - PubMed

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