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. 2020 Jul 25;5(3):2992-2993.
doi: 10.1080/23802359.2020.1797570.

The complete chloroplast genome of Sinomenium acutum (Menispermaceae)

Jinhyuk Kim  1 , Junki Lee  1 , Sanghee Um  1 , Sunseong Choi  1 , Hyojin Kim  1 , Hyang Sook Chun  2 , Gyoungju Nah  1
Affiliations

The complete chloroplast genome of Sinomenium acutum (Menispermaceae)

Jinhyuk Kim et al. Mitochondrial DNA B Resour. .

Abstract

We generated the complete chloroplast genome sequence of Sinomenium acutum, a species of the Menispermaceae family, and characterized from the de novo assembly of Illumina HiSeq paired-end sequencing data. The total length of the chloroplast genome of S. acutum was 162,787 bp with a large single-copy (LSC) region of 91,430 bp, a small single-copy (SSC) region of 21,245 bp, and a pair of identical inverted repeat regions (IRs) of 25,056 bp. The total of 131 genes were annotated in the chloroplast genome of Sinomenium acutum, including 85 protein-coding genes, 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. The phylogenetic analysis of S. acutum with 18 related species revealed the closest taxonomical relationship with Menispermum dauricum in the Menispermaceae family.

Keywords: Sinomenium acutum; complete chloroplast genome; next generation sequencing; phylogenetic tree.

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Conflict of interest statement

No potential conflict of interest was reported by the authors.

Figures

Figure 1.
Figure 1.
The phylogenetic tree was constructed using total chloroplast genome sequences of 18 species using Maximum Likelihood (ML) method with bootstrap values from 1,000 replicates.
See this image and copyright information in PMC

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