Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2020 Jul 25;5(3):2994-2995.
doi: 10.1080/23802359.2020.1797571.

The complete chloroplast genome of Typhonium giganteum (Araceae)

Jinhyuk Kim  1 , Junki Lee  1 , Sunseong Choi  1 , Sanghee Um  1 , Hyojin Kim  1 , Hyang Sook Chun  2 , Gyoungju Nah  1
Affiliations

The complete chloroplast genome of Typhonium giganteum (Araceae)

Jinhyuk Kim et al. Mitochondrial DNA B Resour. .

Abstract

The complete chloroplast genome sequence of Typhonium giganteum, a species of the Araceae family, was characterized from the de novo assembly of HiSeq (Illumina Co.) paired-end sequencing data. The chloroplast genome of T. giganteum was 165,289 bp in length, with a large single-copy (LSC) region of 91,747 bp, a small single-copy (SSC) region of 22,550 bp, and a pair of identical inverted repeat regions (IRs) of 25,496 bp. The genome contained a total of 132 genes, including 86 protein-coding genes, 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. The phylogenetic analysis of T. giganteum with 12 related species revealed the closest taxonomical relationship with Pinellia pedatisecta in the Araceae.

Keywords: Typhonium giganteum; complete chloroplast genome; next generation sequencing; phylogenetic analysis.

PubMed Disclaimer

Conflict of interest statement

No potential conflict of interest was reported by the authors.

Figures

Figure 1.
Figure 1.
The phylogenetic tree was constructed using total chloroplast genome sequences of 12 species and T. giganteum using Maximum Likelihood (ML) method with bootstrap values from 1,000 replicates.
See this image and copyright information in PMC

References

    1. Chi S, Cai W, Liu P, Zhang Z, Chen X, Gao L, Qi J, Bi L, Chen L, Qi Z.. 2010. Baifuzi reduces transient ischemic brain damage through an interaction with the STREX Domain of BKCa channels. Cell Death Dis. 1(1):e13. - PMC - PubMed
    1. Cusimano N, Barrett MD, Hetterscheid WL, Renner SS.. 2010. A phylogeny of the Areae (Araceae) implies that Typhonium, Sauromatum, and the Australian species of Typhonium are distinct clades. Taxon. 59(2):439–447.
    1. Katoh K, Misawa K, Kuma K, Miyata T.. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066. - PMC - PubMed
    1. Kim K, Lee S-C, Lee J, Yu Y, Yang K, Choi B-S, Koh H-J, Waminal NE, Choi H-I, Kim N-H, et al. . 2015. Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Sci Rep. 5:15655. - PMC - PubMed
    1. Kumar S, Stecher G, Tamura K.. 2016. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33(7):1870–1874. - PMC - PubMed

LinkOut - more resources