Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2020 Aug 3;5(3):3124-3126.
doi: 10.1080/23802359.2020.1800431.

The complete chloroplast genome of Wiesnerella denudata (Mitt.) Steph. (Wiesnerellaceae, Marchantiophyta)

Seung Se Choi  1 , Woochan Kwon  2   3 , Jongsun Park  2   3
Affiliations

The complete chloroplast genome of Wiesnerella denudata (Mitt.) Steph. (Wiesnerellaceae, Marchantiophyta)

Seung Se Choi et al. Mitochondrial DNA B Resour. .

Abstract

We completed chloroplast genome of Wiesnerella denudata (Mitt.) Steph, only one species of the monotypic Wiesnerella genus and family Wiesnerellaceae Inoue. It is 122,500 bp and has four subregions: 82,143 bp of large single copy (LSC) and 20,009 bp of small single copy (SSC) regions are separated by 10,174 bp of inverted repeat (IR) regions including 132 genes (88 protein-coding genes, eight rRNAs, and 36 tRNAs). The overall GC content is 28.8% and those in the LSC, SSC, and IR regions are 26.4, 24.6, and 42.8%, respectively. Phylogenetic trees show incongruencies of phylogenetic relationship of W. denudata, requiring additional research.

Keywords: Marchantiophyta; Wiesnerella denudata; Wiesnerellaceae; chloroplast genome.

PubMed Disclaimer

Conflict of interest statement

No potential conflict of interest was reported by the author(s).

Figures

Figure 1.
Figure 1.
Neighbor joining (bootstrap repeat is 10,000), maximum likelihood (bootstrap repeat is 1000), and Bayesian inference phylogenetic (number of generation is 1,100,000) trees of 10 complete chloroplast genomes: Wiesnerella denudata (MT712073 in this study), Dumortiera hirsuta (NC_039590; Kwon et al. 2019b), Marchantia paleacea (NC_001319; Shimda and Sugiuro 1991), Marchantia paleacea subsp. Diptera (LC035012), Marchantia polymorpha subsp. ruderalis (NC_037507, MK202952, and MG762001; Kijak et al. ; Bowman et al. ; Kwon et al. 2019a), Reboulia hemisphaerica (NC_042418; Kwon, Min, Kim, et al. 2019), Riccia fluitans (NC_042887; Kwon, Min, Xi, et al. 2019), and Scapania ampliata (MT644123; doi:10,1080/23802359.2020.1791011) as outgroup species. Phylogenetic tree was drawn based on the maximum-likelihood phylogenetic tree. Family names were displayed with gray bars in the phylogenetic tree. The numbers above branches indicate bootstrap support values of maximum likelihood, neighbor joining, and Bayesian Inference phylogenetic trees, respectively.
See this image and copyright information in PMC

References

    1. Borovichev EA, Bakalin VA.. 2014. A survey of Marchantiales in the Russian far east II. Wiesnerllaceae – a new family for the Russian liverworts flora. Arct J Bryol. 23(1):1–4.
    1. Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, et al. 2017. Insights into land plant evolution garnered from the Marchantia polymorpha genome. Cell. 171(2):287–304. - PubMed
    1. Crandall-Stotler B, Stotler R, Long D.. 2009. Phylogeny and classification of the Marchantiophyta. Edinburgh J Bot. 66(1):155–198.
    1. Huelsenbeck JP, Ronquist F.. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 17(8):754–755. - PubMed
    1. Inoue H. 1976. Illustrations of Japanese Hepaticae. Tokyo, Japan: Tsukijishokan. p. 1–193.

LinkOut - more resources