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. 2018 Oct 17;3(2):1110-1111.
doi: 10.1080/23802359.2018.1501311.

Complete plastome sequence of Paeonia lactiflora Pall. (Paeoniaceae: Saxifragales)

Tahir H Samigullin  1 , Maria D Logacheva  1 , Galina V Degtjareva  2 , Sergey V Efimov  2 , Elena I Terentieva  2 , Carmen M Vallejo-Roman  1
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Complete plastome sequence of Paeonia lactiflora Pall. (Paeoniaceae: Saxifragales)

Tahir H Samigullin et al. Mitochondrial DNA B Resour. .

Abstract

Paeonia lactiflora has been listed as an Endangered species in Russian Federation. The complete plastome was assembled from Next-Generation Sequencing data. It is 152,747 bp in length. It consists of a pair of Inverted Repeat regions (25,651 bp), separated by a small single copy region of 17,033 bp and a large single copy region of 84,412 bp. The plastome encoded 128 genes, including 83 protein coding genes, 37 tRNA, eight rRNA genes, four pseudogenes, and is characterized by loss of the rpl32 and infA genes. Phylogenetic analysis of Paeoniaceae plastomes revealed that P. lactiflora clustered with Eurasian peonies (section Paeoniae).

Keywords: Illumina sequencing; Paeonia lactiflora; phylogenetic analysis; plastome.

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Conflict of interest statement

No potential conflict of interest was reported by the authors.

Figures

Figure 1.
Figure 1.
Bayesian tree based on 12 complete plastome sequences. Accession numbers: P. lactiflora (MG897127, this study), Paeonia sp. Sd0052 (KF753636), P. anomala subsp. veitchii (NC_032401), P. obovata (NC_026076), P. ludlowii (NC_035623), P. delavayi (NC_035718), P. ostii (NC_036834), P. suffruticosa (MH_191384), P. rockii (MF488719), P. brownii (MH191385), Sinowilsonia henryi (NC_036069), and Liquidambar formosana (NC_023092).
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References

    1. Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540–552. - PubMed
    1. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
    1. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792–1797. - PMC - PubMed
    1. Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13:715. - PMC - PubMed
    1. Pallas PS. 1776. Reise durch Verschiedene Provinzen des Russischen Reichs. St. Petersburg: Kaiserliche Academie der Wissenschaften

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