This site needs JavaScript to work properly. Please enable it to take advantage of the complete set of features!

Skip to main page content

Add to Collections

Your saved search

Name of saved search:

Search terms:

Test search terms

Would you like email updates of new search results?

Yes
No

Email: (change)

Frequency:

Which day?

Which day?

Report format:

Send at most:

Send even when there aren't any new results

Optional text in email:

Your RSS Feed

. 2021 Mar;591(7848):30-33.

doi: 10.1038/d41586-021-00525-x.

Want to track pandemic variants faster? Fix the bioinformatics bottleneck

Emma B Hodcroft, Nicola De Maio, Rob Lanfear, Duncan R MacCannell, Bui Quang Minh, Heiko A Schmidt, Alexandros Stamatakis, Nick Goldman, Christophe Dessimoz

PMID: 33649511
DOI: 10.1038/d41586-021-00525-x

Want to track pandemic variants faster? Fix the bioinformatics bottleneck

Emma B Hodcroft et al. Nature. 2021 Mar.

. 2021 Mar;591(7848):30-33.

doi: 10.1038/d41586-021-00525-x.

Authors

Emma B Hodcroft, Nicola De Maio, Rob Lanfear, Duncan R MacCannell, Bui Quang Minh, Heiko A Schmidt, Alexandros Stamatakis, Nick Goldman, Christophe Dessimoz

PMID: 33649511
DOI: 10.1038/d41586-021-00525-x

No abstract available

Keywords: Bioinformatics; Genomics; Public health; SARS-CoV-2.

PubMed Disclaimer

Comment in

Sharing COVID data? Check these recommendations and guidelines.
Hanahoe H, Austin CC, Shanahan H. Hanahoe H, et al. Nature. 2021 Apr;592(7855):507. doi: 10.1038/d41586-021-01028-5. Nature. 2021. PMID: 33879885 No abstract available.

Similar articles

India's COVID crisis flags need to forecast variants.
Agrawal A. Agrawal A. Nature. 2021 Jun;594(7861):9. doi: 10.1038/d41586-021-01427-8. Nature. 2021. PMID: 34075247 No abstract available.
Alarming COVID variants show vital role of genomic surveillance.
Cyranoski D. Cyranoski D. Nature. 2021 Jan;589(7842):337-338. doi: 10.1038/d41586-021-00065-4. Nature. 2021. PMID: 33452508 No abstract available.
How bad is Omicron? What scientists know so far.
Callaway E, Ledford H. Callaway E, et al. Nature. 2021 Dec;600(7888):197-199. doi: 10.1038/d41586-021-03614-z. Nature. 2021. PMID: 34857948 No abstract available.
Leveraging on the genomics and immunopathology of SARS-CoV-2 for vaccines development: prospects and challenges.
Abdullahi IN, Emeribe AU, Adekola HA, Abubakar SD, Dangana A, Shuwa HA, Nwoba ST, Mustapha JO, Haruna MT, Olowookere KA, Animasaun OS, Ugwu CE, Onoja SO, Gadama AS, Mohammed M, Daneji IM, Amadu DO, Ghamba PE, Onukegbe NB, Shehu MS, Isomah C, Babayo A, Ahmad AE. Abdullahi IN, et al. Hum Vaccin Immunother. 2021 Mar 4;17(3):620-637. doi: 10.1080/21645515.2020.1812313. Epub 2020 Sep 16. Hum Vaccin Immunother. 2021. PMID: 32936732 Free PMC article. Review.
SARS-CoV-2 genomics: An Indian perspective on sequencing viral variants.
Srivastava S, Banu S, Singh P, Sowpati DT, Mishra RK. Srivastava S, et al. J Biosci. 2021;46(1):22. doi: 10.1007/s12038-021-00145-7. J Biosci. 2021. PMID: 33737495 Free PMC article. Review.

See all similar articles

Cited by

Virus sequencing performance during the SARS-CoV-2 pandemic: a retrospective analysis of data from multiple rounds of external quality assessment in Austria.
Camp JV, Puchhammer-Stöckl E, Aberle SW, Buchta C. Camp JV, et al. Front Mol Biosci. 2024 Feb 5;11:1327699. doi: 10.3389/fmolb.2024.1327699. eCollection 2024. Front Mol Biosci. 2024. PMID: 38375507 Free PMC article.
Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations.
Gangavarapu K, Latif AA, Mullen JL, Alkuzweny M, Hufbauer E, Tsueng G, Haag E, Zeller M, Aceves CM, Zaiets K, Cano M, Zhou J, Qian Z, Sattler R, Matteson NL, Levy JI, Lee RT, Freitas L, Maurer-Stroh S; GISAID core and curation team; Suchard MA, Wu C, Su AI, Andersen KG, Hughes LD. Gangavarapu K, et al. Res Sq [Preprint]. 2022 Jun 28:rs.3.rs-1723829. doi: 10.21203/rs.3.rs-1723829/v1. Res Sq. 2022. Update in: Nat Methods. 2023 Apr;20(4):512-522. doi: 10.1038/s41592-023-01769-3. PMID: 35794893 Free PMC article. Updated. Preprint.
Data Science in Undergraduate Life Science Education: A Need for Instructor Skills Training.
Emery NC, Crispo E, Supp SR, Farrell KJ, Kerkhoff AJ, Bledsoe EK, O'Donnell KL, McCall AC, Aiello-Lammens ME. Emery NC, et al. Bioscience. 2021 Oct 27;71(12):1274-1287. doi: 10.1093/biosci/biab107. eCollection 2021 Dec. Bioscience. 2021. PMID: 34867087 Free PMC article.
covSampler: A subsampling method with balanced genetic diversity for large-scale SARS-CoV-2 genome data sets.
Cheng Y, Ji C, Han N, Li J, Xu L, Chen Z, Yang R, Zhou HY, Wu A. Cheng Y, et al. Virus Evol. 2022 Aug 5;8(2):veac071. doi: 10.1093/ve/veac071. eCollection 2022. Virus Evol. 2022. PMID: 36533145 Free PMC article.
Immune landscape and redox imbalance during neurological disorders in COVID-19.
Thakur A, Sharma V, Averbek S, Liang L, Pandya N, Kumar G, Cili A, Zhang K. Thakur A, et al. Cell Death Dis. 2023 Sep 6;14(9):593. doi: 10.1038/s41419-023-06102-6. Cell Death Dis. 2023. PMID: 37673862 Free PMC article. Review.

See all "Cited by" articles

References

1. Hadfield, J. et al. Bioinformatics 34, 4121–4123 (2018). - PubMed - DOI - PMC
1. Swadi, T. et al. Emerg. Infect. Dis. 27, 687–693 (2021). - PubMed - DOI
1. Lemieux, J. E. Science 371, eabe3261 (2021). - PubMed - DOI
1. van Dorp, L. et al. Nature Commun. 11, 5986 (2020). - PubMed - DOI
1. Starr, T. N. et al. Cell 182, 1295–1310 (2020). - PubMed - DOI - PMC

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions

Substances

Actions

LinkOut - more resources

Full Text Sources
- Nature Publishing Group
Other Literature Sources
- H1 Connect - Access expert opinions and insights on biomedical research.
- scite Smart Citations
Medical
- MedlinePlus Health Information
Miscellaneous
- NCI CPTAC Assay Portal