Culturing and Multiplexed Time-Lapse Imaging of Fungal Isolates from Marine and Coastal Environments
- PMID: 33798277
- DOI: 10.1002/cpz1.94
Culturing and Multiplexed Time-Lapse Imaging of Fungal Isolates from Marine and Coastal Environments
Erratum in
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Group Correction Statement (Conflict of Interest Statements).Curr Protoc. 2022 Aug;2(8):e551. doi: 10.1002/cpz1.551. Curr Protoc. 2022. PMID: 36005903 Free PMC article. No abstract available.
Abstract
Fungi play a crucial role in biogeochemical cycling and shaping biological communities at macro- and microcosmic scales. However, fungi have been largely overlooked in studies of marine ecology and microbiology. Here we present protocols for preparing culture media, collecting and culturing fungi from several types of marine environments and animal hosts, and preparing microscopy slides for long-term time lapse imaging of fungal isolates. © 2021 Wiley Periodicals LLC. Basic Protocol 1: Solid media preparation Alternate Protocol 1: Liquid media preparation Basic Protocol 2: Sample collection and plating from ocean water Alternate Protocol 2: Sample collection and plating from coastal sediment Alternate Protocol 3: Sample collection and plating from animal holobionts Support Protocol 1: Making frozen stocks Support Protocol 2: Streaking cultures from frozen stocks Basic Protocol 3: Slide preparation and assembly for imaging © 2021 by John Wiley & Sons, Inc.
Keywords: environmental microbiology; marine fungi; microscopy; mycology.
© 2021 Wiley Periodicals LLC.
References
Literature Cited
-
- Amend, A., Burgaud, G., Cunliffe, M., Edgcomb, V. P., Ettinger, C. L., Gutiérrez, M. H., … Gladfelter, A. S. (2019). Fungi in the marine environment: Open questions and unsolved problems. MBio, 10(2). doi: 10.1128/mBio.01189-18.
-
- Gladfelter, A. S., James, T. Y., & Amend, A. S. (2019). Marine fungi. Current Biology, 29(6), R191-R195. doi: 10.1016/j.cub.2019.02.009.
-
- Hawksworth, D. L. (2001). The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycological Research, 105(6), 1422-1432. doi: 10.1017/S0953756201004725.
-
- Hibbett, D. S., Binder, M., Bischoff, J. F., Blackwell, M., Cannon, P. F., Eriksson, O. E., … Zhang, N. (2007). A higher-level phylogenetic classification of the Fungi. Mycological Research, 111(5), 509-547. doi: 10.1016/j.mycres.2007.03.004.
-
- Li, H., Ong, G., & Goh, S. (2020). Malassezia culture on modified Dixon media. doi: 10.17504/protocols.io.bjrakm2e.
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