When are hypotheses useful in ecology and evolution?

Abstract

Research hypotheses have been a cornerstone of science since before Galileo. Many have argued that hypotheses (1) encourage discovery of mechanisms, and (2) reduce bias-both features that should increase transferability and reproducibility. However, we are entering a new era of big data and highly predictive models where some argue the hypothesis is outmoded. We hypothesized that hypothesis use has declined in ecology and evolution since the 1990s, given the substantial advancement of tools further facilitating descriptive, correlative research. Alternatively, hypothesis use may have become more frequent due to the strong recommendation by some journals and funding agencies that submissions have hypothesis statements. Using a detailed literature analysis (N = 268 articles), we found prevalence of hypotheses in eco-evo research is very low (6.7%-26%) and static from 1990-2015, a pattern mirrored in an extensive literature search (N = 302,558 articles). Our literature review also indicates that neither grant success nor citation rates were related to the inclusion of hypotheses, which may provide disincentive for hypothesis formulation. Here, we review common justifications for avoiding hypotheses and present new arguments based on benefits to the individual researcher. We argue that stating multiple alternative hypotheses increases research clarity and precision, and is more likely to address the mechanisms for observed patterns in nature. Although hypotheses are not always necessary, we expect their continued and increased use will help our fields move toward greater understanding, reproducibility, prediction, and effective conservation of nature.

Keywords: hypothesis; mechanisms; multiple working hypotheses; prediction; scientific method.

FIGURE 1

Understanding mechanisms often increases model transferability. Panels (a and b) show snowshoe hares in winter and summer coloration, respectively. If a correlative (i.e., nonmechanistic) model for hare survival as a function of color was trained only on hares during the winter and then extrapolated into the summer months, it would perform poorly (white hares would die disproportionately under no‐snow conditions). On the other hand, a researcher testing mechanisms for hare survival would (ideally via experimentation) arrive at the conclusion that it is not the whiteness of hares, but rather blending with the background that confers survival (the “camouflage” hypothesis). Understanding mechanism results in model predictions being robust to novel conditions. Panel (c) Shows x and y geographic locations of training (blue filled circles) and testing (blue open circles) locations for a hypothetical correlative model. Even if the model performs well on these independent test data (predicting open to closed circles), there is no guarantee that it will predict well outside of the spatial bounds of the existing data (red circles). Nonstationarity (in this case caused by a nonlinear relationship between predictor and response variable; panel d) could result in correlative relationships shifting substantially if extrapolated to new times or places. However, mechanistic hypotheses aimed at understanding the underlying factors driving the distribution of this species would be more likely to elucidate this nonlinear relationship. In both of these examples, understanding drivers behind ecological patterns—via testing mechanistic hypotheses—is likely to enhance model transferability

FIGURE 2

Trends in hypothesis use from 1991–2015 from a sample of the ecological and evolutionary literature (N = 268, (a) multiple alternative hypotheses, (b) mechanistic hypotheses, (c) descriptive hypotheses [predictions], and (d) no hypotheses present). We detected no temporal trend in any of these variables. Lines reflect LOESS smoothing with 95% confidence intervals. Dots show raw data with darker colors indicating overlapping data points. The total number of publications in ecology and evolution in selected journals has increased (e), but use of the term “hypoth*” in the title or abstracts of these 302,558 articles has remained flat, and at very low prevalence (f)

FIGURE 3

Frequency distributions showing proportion of various hypotheses types across ecology and evolution journals included in our detailed literature search. Hypothesis use varied greatly across publication outlets. We considered J. Applied Ecology, J. Wildlife Management, J. Soil, and Water Cons., Ecological Applications, Conservation Biology, and Biological Conservation to be applied journals; both applied and basic journals varied greatly in the prevalence of hypotheses

FIGURE 4

Results of our detailed literature search showing the relationship between having a hypothesis (or not) and three commonly sought after scientific rewards (Average times a paper is cited/year, Journal impact factor, and the likelihood of having a major national competitive grant). We found no statistically significant relationships between having a hypothesis and citation rates or grants, but articles with hypotheses tended to be published in higher impact journals

FIGURE 5

Hypothesis generation is possible at all levels of organization, and does not need to get to the bottom of a causal hierarchy to be useful. As illustrated in this case study (after Betts et al., 2015), using published work by the authors, support for a hypothesis at one level often generates a subsequent question and hypotheses at the next. After each new finding we had to return to the white board and draw out new alternative hypotheses as we progressed further down the hierarchy. Supported hypotheses are shown in black and the alternative hypotheses that were eliminated are in grey. A single study is not expected to tackle an entire mechanistic hierarchy. In fact, we still have yet to uncover the physiological mechanisms involved in this phenomenon