Dissection of the Origin of π-Holes and the Noncovalent Bonds in Which They Engage
- PMID: 34310147
- DOI: 10.1021/acs.jpca.1c05431
Dissection of the Origin of π-Holes and the Noncovalent Bonds in Which They Engage
Abstract
Accompanying the rapidly growing list of σ-hole bonds has come the acknowledgment of parallel sorts of noncovalent bonds which owe their stability in large part to a deficiency of electron density in the area above the molecular plane, known as a π-hole. The origins of these π-holes are probed for a wide series of molecules, comprising halogen, chalcogen, pnicogen, tetrel, aerogen, and spodium bonds. Much like in the case of their σ-hole counterparts, formation of the internal covalent π-bond in the Lewis acid molecule pulls density toward the bond midpoint and away from its extremities. This depletion of density above the central atom is amplified by an electron-withdrawing substituent. At the same time, the amplitude of the π*-orbital is enhanced in the region of the density-depleted π-hole, facilitating a better overlap with the nucleophile's lone pair orbital and a stabilizing n → π* charge transfer. The presence of lone pairs on the central atom acts to attenuate the π-hole and shift its position somewhat, resulting in an overall weakening of the π-hole bond. There is a tendency for π-hole bonds to include a higher fraction of induction energy than σ-bonds with proportionately smaller electrostatic and dispersion components, but this distinction is less a product of the σ- or π-character and more a function of the overall bond strength.
Similar articles
-
The pnicogen bond: its relation to hydrogen, halogen, and other noncovalent bonds.Acc Chem Res. 2013 Feb 19;46(2):280-8. doi: 10.1021/ar3001316. Epub 2012 Nov 7. Acc Chem Res. 2013. PMID: 23135342
-
Anatomy of π-hole bonds: Linear systems.J Chem Phys. 2021 Nov 7;155(17):174302. doi: 10.1063/5.0067570. J Chem Phys. 2021. PMID: 34742196
-
Noncovalent Bonds through Sigma and Pi-Hole Located on the Same Molecule. Guiding Principles and Comparisons.Molecules. 2021 Mar 20;26(6):1740. doi: 10.3390/molecules26061740. Molecules. 2021. PMID: 33804617 Free PMC article. Review.
-
The bright future of unconventional σ/π-hole interactions.Chemphyschem. 2015 Aug 24;16(12):2496-517. doi: 10.1002/cphc.201500314. Epub 2015 Jun 26. Chemphyschem. 2015. PMID: 26118675
-
Classification of So-Called Non-Covalent Interactions Based on VSEPR Model.Molecules. 2021 Aug 15;26(16):4939. doi: 10.3390/molecules26164939. Molecules. 2021. PMID: 34443526 Free PMC article. Review.
Cited by
-
Chalcogen Bond as a Factor Stabilizing Ligand Conformation in the Binding Pocket of Carbonic Anhydrase IX Receptor Mimic.Int J Mol Sci. 2022 Nov 8;23(22):13701. doi: 10.3390/ijms232213701. Int J Mol Sci. 2022. PMID: 36430173 Free PMC article.
-
Halogen Bond via an Electrophilic π-Hole on Halogen in Molecules: Does It Exist?Int J Mol Sci. 2024 Apr 23;25(9):4587. doi: 10.3390/ijms25094587. Int J Mol Sci. 2024. PMID: 38731806 Free PMC article.
-
Diverse Cyclization Pathways Between Nitriles with Active α-Methylene Group and Ambiphilic 2-Pyridylselenyl Reagents Enabled by Reversible Covalent Bonding.Int J Mol Sci. 2024 Nov 28;25(23):12798. doi: 10.3390/ijms252312798. Int J Mol Sci. 2024. PMID: 39684517 Free PMC article.
-
Conformation-Associated C···dz2-PtII Tetrel Bonding: The Case of Cyclometallated Platinum(II) Complex with 4-Cyanopyridyl Urea Ligand.Int J Mol Sci. 2024 Apr 5;25(7):4052. doi: 10.3390/ijms25074052. Int J Mol Sci. 2024. PMID: 38612862 Free PMC article.
-
The Bifurcated σ-Hole···σ-Hole Stacking Interactions.Molecules. 2022 Feb 13;27(4):1252. doi: 10.3390/molecules27041252. Molecules. 2022. PMID: 35209040 Free PMC article.
LinkOut - more resources
Full Text Sources
Research Materials
Miscellaneous