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Review
. 2021 Sep:209:106301.
doi: 10.1016/j.cmpb.2021.106301. Epub 2021 Jul 27.

A review of mathematical model-based scenario analysis and interventions for COVID-19

Affiliations
Review

A review of mathematical model-based scenario analysis and interventions for COVID-19

Regina Padmanabhan et al. Comput Methods Programs Biomed. 2021 Sep.

Abstract

Mathematical model-based analysis has proven its potential as a critical tool in the battle against COVID-19 by enabling better understanding of the disease transmission dynamics, deeper analysis of the cost-effectiveness of various scenarios, and more accurate forecast of the trends with and without interventions. However, due to the outpouring of information and disparity between reported mathematical models, there exists a need for a more concise and unified discussion pertaining to the mathematical modeling of COVID-19 to overcome related skepticism. Towards this goal, this paper presents a review of mathematical model-based scenario analysis and interventions for COVID-19 with the main objectives of (1) including a brief overview of the existing reviews on mathematical models, (2) providing an integrated framework to unify models, (3) investigating various mitigation strategies and model parameters that reflect the effect of interventions, (4) discussing different mathematical models used to conduct scenario-based analysis, and (5) surveying active control methods used to combat COVID-19.

Keywords: Active control; COVID-19; Mathematical models; Unified framework.

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Conflict of interest statement

Declaration of Competing Interest The authors declare that they have no conflict of interest.

Figures

Fig. 1
Fig. 1
Schematic diagram representing the general model given by (1). In this figure, the dark inward arrow denote the import of population from other region/subpopulation.
Fig. 2
Fig. 2
Simple SEIR (susceptible-exposed-infected-recovered) model with time constants and inter-compartmental transmission rates , , , .
Fig. 3
Fig. 3
Model parameters that are affected by various interventions are given in parenthesis. Border closure, lockdown, social distancing, hygiene habits, testing, contact tracing, and isolation reduce the exposure rate β and infection rate γ. Hygiene habits increase the protection rate α. Reverse quarantine of elderly and chronically ill population, compliance with regulations, and vaccination also increase protection rate α. Hospitalization and use of supportive medicines increase recovery rate λ. All the interventions together contribute to the journey towards the containment of the epidemics.
Fig. 4
Fig. 4
Model 1: Mathematical model of COVID-19 that describes the mobility of individuals from severely infected region to mildly infected one. N(0)A,B=8×106, IsA(0)=IaA(0)=2500, IsB(0)=IaB(0)=250, R0A=γAχA(μ+ω)(μa+μ+ϵA+λa+ω), and R0B=γB[χB+ωχAμ+ω]μ(μa+μ+ϵB+λa), λa=1/8 (per unit time), λs=1/14 (per unit time), ωmax=0.4/(365×8×106), μs=0.02/11, μa=0.2/11 (per unit time), μ=0.007/365 (per unit time), ϵi=ϵ0+kϵr, ϵ0=1/11, kϵ=0.3, and χi=260, i=A,B (newborns per unit time) . Control intervention ui(t) is assumed to alter γi(t), where γi(t)=γ0(1ui(t))2Si(t)Ii(t), i=A,B, and γ0=6.25×108 (per unit time). .
Fig. 5
Fig. 5
Model 2: Mathematical model of COVID-19 to study the transmission of COVID-19 for 5 regions in China. βi(t)=β0iIi(t)Ni, i=1,,5, for Mainland, Hubei province, Wuhan, Beijing, and Shanghai, respectively, N1(0)=1340×106, N2(0)=45×106, N3(0)=14×106, N4(0)=22×106, N5(0)=24×106, E1(0)=696, E2(0)=592, E3(0)=318, E4(0)=27, E5(0)=18, I1(0)=652, I2(0)=515, I3(0)=389, I4(0)=19, I5(0)=23, β0i=1.0(1/day), i=1,2,3,5, β04=0.99(1/day), τl=1γ=2(days) for the 5 regions, τqi=δi1, i=1,2,3,4,5, δ11=6.6(days), δ21=7.2(days), δ31=7.4(days), δ41=5.7(days), δ51=5.6(days), α1=0.172(1/day), α2=0.133(1/day), α3=0.085(1/day), α4=0.175(1/day), α5=0.183(1/day), and R0=β×δ1×(1α)T, where T is the number of days .
Fig. 6
Fig. 6
Model 3: Mathematical model of COVID-19 that accounts for disease severity and hospital saturation, where N(0)=67×106, I(0)=120, S(0)=N(0)I(0)=66.99×106, Im0=pI0, Is0=(1p)I0, Em(0)=Es(0)=Iam(0)=Ias(0)=Rm(0)=Rs(0)=D(0)=0, R0=2.5, μh=0, if Is(t)<H, μh=μh, if Is(t)H, μ=μmin,ifIs(t)<H, μ=μmaxifIs(t)H, μmin=8.82×103 (1/day), μmax=2μmin, τl=0.238(1/day), τa=1, λ1=117(1/day), λ2=120(1/day), p=.9, m=0.2, μh=105, ρ=2, and H=12000. i=19μhxi(t) into D(t) denotes that the population that move out of the other 9 compartments due to hospital saturation are added to the death compartment . Control intervention u(t) is assumed to alter β(t), where β(t)=(1u(t))(β0(Iam(t)+Ias(t))+β0(Im(t)+mIs(t))), β0=2.24×109.
Fig. 7
Fig. 7
Model 4: Mathematical model of COVID-19 that models differential disease transmission in frontliners and general public, β1(t)=β10Ig(t)N(t), β2(t)=β20If(t)N(t), βi0=R0i(Sg(0)+Eg(0)+Ig(0)+Sf(0)+Ef(0)+If(0))τ(Sg(0)+Sf(0)), i=1,2, R01=2.5, R02=10, τin=14days, Sg(0)=100,000, Sf(0)=1000, Ef(0)=100, Ig(0)=10, Eg(0)=If(0)=0, Hi(0)=Ri(0)=0, αi=00.9, γi=10/14, δi=0.01/14, ρi=0.1, μi=0.03/14, σi=0.1/30, λhi=0.98/14, λi=0.96/14, and μhi=0.02/14, i=1,2.
Fig. 8
Fig. 8
Model 5: Mathematical model of COVID-19 with reinfection, compliant subpopulation, and viral concentration on contaminated surfaces . N(0)=59.2×106, N(t)=S(t)+Sc(t)+Ia+I(t)+R(t), λ=0.0499(1/day), λa=0.0749(1/day), θ=0.5999, Γ=μN(0)=2113.44 (persons/day), ς=0.6499 (intensity/day), e(γ)=γnγ0n+γn, b=0.6337, σ=2.74×106(1/day), a=0.6503, f=0.8669, f=0.1499, γ=0.2499 (1/day), γva=0.1019 (pathogens/person/day), γvs=0.4315 (pathogens/person/day), d=0.7525 (1/day), μ=0.11 (1/day), μ=3.57×105(1/day), and C50=2091775(pathogens). Control intervention u1(t) (effect of social distancing) and u2(t) (effect of disinfecting the environment) are assumed to alter γ(t), where γ(t)=(1u1(t))β(I(t)+u2(t)Ia(t)N(t))+(1u2(t))βch(C(t)C(t)+C50), β=0.27(contacts/day), βch=0.00101(contacts/day), u1(t)=01% and u2(t)=2.663(1.13).
Fig. 9
Fig. 9
Model 6: Mathematical model of COVID-19 that accounts for social behavior of compliant subpopulation. N(0)=3,000,282, S(0)=3×106, Sc(0)=200, E(0)=40, Ec(0)=40, Ia(0)=2, and the initial condition for all other compartments is 0, R0=<1, δ=1/7(1/day), λ=0.0714(1/day)), λ=0.0714(1/day), ψ=0.002(1/day), μ=0.02(1/day), μ=1/(365×50)(1/day), σ=0.2(1/day), Γ=100 (1/day), ζ=1(1/day), ν=0.1(1/day), θ=1/7(1/day), γs=0.86834(1/day), a=0.8683, and b=0.4. Control interventions u1(t) (effect of quarantine) and u2(t) (effect of isolation) are assumed to alter β1(t)=β0(u1(t)mqQ(t)+maIa(t)+msIs(t)+u2(t)mhHICU(t))N(t)(1u1(t))Q(t)(1u2(t))HICU(t), β2(t)=β0(macIac(t)+mscIsc(t)+u2(t)mhHICU(t))N(t)Q(t)(1u2(t))HICU(t), β0=0.3531(1/day), where mq=0.3×7/3, ma=0.425×7/3, ms=0.425×7/3, mac=0.225×7/4, msc=0.3×7/3, and mh=0.57×7/4.
Fig. 10
Fig. 10
Model 7: Mathematical model of COVID-19 that accounts for the influence of public health education, quarantine and hospitalization. S(0)=12×106, E(0)=1565, Q(0)=800, I(0)=695, H(0)=326, and R(0)=200, λ=0.03521(1/day), λh=0.04255(1/day), μ=0.0079(1/day), μh=0.0068(1/day), μ=0.000034(1/day), Γ=600(1/day), δ=0.07143(1/day), ψ=0.1327(1/day), ψq=0.1259(1/day), R0=1.51 when the exposed population is not quarantined, while R0=0.76 when all of them are on quarantine, and R0=2.5 when the infected individuals are not quarantined or isolated. Control intervention u(t) is assumed to alter β(t), where β(t)=(1u(t))β0(I(t)+meE(t)+mqQ(t)+mhH(t))N(t), β0=0.25(1/day), u(t)=[0,1], me=0.3, and mh=mq=0.1, .
Fig. 11
Fig. 11
Model 8: Mathematical model of COVID-19 that accounts for age-wise interaction rates. The parameters are estimated for 9 age groups such as 0–9, 10–19, 20–29, 30–39, 40–49, 50–59, 60–69, 70–79, and 80, for i=1,2,9, respectively, βi(t)=ϕj=19A(i,j)Isj(t)Nj+ϕj=19A(i,j)Iaj(t)Nj, τin=1γ=5, τa=1λa=4, τs=1λs=10, τh=1λh=10.4 (days). N1=12%, Ni=13%, i=2, ,5, N6=14%, N7=12%, N8=7%, N9=4%, a1=11.1%, ai=12.1%, i=2, ,5, a6=17.5%, ai=28.7%, i=7,8,9, ψ1=18.2%, ψ2=5.5%, ψ3=6.8%, ψi=13.9%, i=4,5, ψ6=25.1%, ψi=51.2%, i=7,8, ψ9=61.7%, μhi=0.2%, i=1,3, μh2=0%, μhi=0.9%, i=4,5, μh6=3.6%, μhi=14.9%, i=7,8, μh9=32.8%, μi=0.1%, i=1,3, μ2=0%, μi=0.4%, i=4,5, μ6=1.4%, μi=5.9%, i=7,8, and μ9=12.9%.
Fig. 12
Fig. 12
Model 9: Mathematical model of COVID-19 that model how school opening delay will affect the pandemic, βi(t)=j=1,2β0ijIj(t)Ni(t), where β0ij=(7.9910.71720.71724.7531), β0ij=(7.81920.85440.85444.6452), βij0=(8.55311.05581.05585.0616) represent transmission matrices for Data 1, Data 2, and Data 3, respectively, ζi(t)=ζ0i(1eeQi(t)), e=0.001, ζ01=1.8138(1/day), ζ02=1.69(1/day), and ζ03=2.121(1/day), for Data 1, Data 2, and Data 3, respectively, m=0.02, λ=1/14(1/day), δ=1/4(1/day), and γ=1/4.1(1/day).
Fig. 13
Fig. 13
Model 10: Mathematical model of COVID-19 that accounts for undetected, detected, symptomatic, asymptomatic, and severely ill cases, where, γau=γau0Iau(t), γad=γad0Iad(t), γu=γu0Iu(t), γd=γd0Is(t), S(0)=1Iau(0)Iad(0)Iu(0)Id(0)Is(0)R(0)D(0), Iau(0)=200/(60×106), Iad(0)=20/(60×106), Iu(0)=1/(60×106), Id(0)=2/(60×106), Is(0)=R(0)=D(0)=0. Parameter values are estimated for 6 different stages of interventions. On Day 1, γau0=0.57, γad0=γd0=0.011, γu0=0.456, Δad=0.171, Δuu=Δdd=0.125, λau=λa=0.034, Δd=0.371, Δs=Δu=λs=λu=0.017, Δds=0.027, μ=0.01, and R0=2.38. After Day 4, with hand washing and social distancing measures, γau0=0.422, γad0=γd0=0.0057, γu0=0.285, and Re=1.66. After Day 12, with screening limited to individuals with symptoms, Δad=0.143 and Re=1.8. After Day 22, with incomplete lockdown, γau0=0.36, γad0=γd0=0.005, γu0=0.2, Δuu=Δdd=0.034, λau=0.08, Δs=0.008, Δds=0.015, λa=0.017, and Re=1.6. After Day 28, with complete lockdown λau0=0.21, γu0=0.11, and Re=0.99. After Day 38, with mass testing campaigns, Δad=0.2, Δuu=Δdd=0.025, λa=λs=Δu=0.02, λ=0.01, and Re=0.85.
Fig. 14
Fig. 14
Model 11: Mathematical model of COVID-19 that accounts for protection of a subpopulation by vaccination, β(t)=β0I(t), Ω(t)=Ω0β0I(t), φ(t)=φ0+φΛM(t), φΛM(t)=(1φ0φ1)MΛM(t)1+MΛM(t), Λ˙M(t)=Λt(ΛcI(t)ΛM(t)), η(t)=η0β0I(t), β0=1.07(1/person/days)λ=0.278(1/days), Λt=(0.00833,), M=500, 1φ1=0.99, η0=0.15, and Ω0=0.2. Control intervention u(t)=φ(t), where φ(t) is the vaccination rate.
Fig. 15
Fig. 15
Model 12: Mathematical model of COVID-19 that accounts for virus dynamics in a host. Ucells(0)=4×108(cells), Icells(0)=0(cells), and C(0)=0.31 (copies/ml), β(t)=βvC(t), βv=4.71×108 (ml/(copies.days)), rv=3.07(((copies/ml)/days)/cells)), c1=1.07(1/days), and c2=2.4(1/days).

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