Single-cell omics: Overview, analysis, and application in biomedical science
- PMID: 34459502
- DOI: 10.1002/jcb.30134
Single-cell omics: Overview, analysis, and application in biomedical science
Abstract
Single-cell sequencing methods provide the highest resolution insight into cellular heterogeneity. Owing to their rapid growth and decreasing cost, they are now widely accessible to scientists worldwide. Single-cell technologies enable analysis of a large number of cells, making them powerful tools to characterise rare cell types and refine our understanding of diverse cell states. Moreover, single-cell application in biomedical sciences helps to unravel mechanisms related to disease pathogenesis and outcome. In this Viewpoint, we briefly describe existing single-cell methods (genomics, transcriptomics, epigenomics, proteomics, and mulitomics), comment on available analysis tools, and give examples of method applications in the biomedical field.
Keywords: bioinformatics; epigenomics; genomics; haematology; multiomics; proteomics; single-cell methods; transcriptomics.
© 2021 The Authors. Journal of Cellular Biochemistry Published by Wiley Periodicals LLC.
Similar articles
-
Single-cell sequencing techniques from individual to multiomics analyses.Exp Mol Med. 2020 Sep;52(9):1419-1427. doi: 10.1038/s12276-020-00499-2. Epub 2020 Sep 15. Exp Mol Med. 2020. PMID: 32929221 Free PMC article. Review.
-
Single-cell multiomics: technologies and data analysis methods.Exp Mol Med. 2020 Sep;52(9):1428-1442. doi: 10.1038/s12276-020-0420-2. Epub 2020 Sep 15. Exp Mol Med. 2020. PMID: 32929225 Free PMC article. Review.
-
Single-Cell Omics Analyses Enabled by Microchip Technologies.Annu Rev Biomed Eng. 2019 Jun 4;21:365-393. doi: 10.1146/annurev-bioeng-060418-052538. Epub 2019 Mar 18. Annu Rev Biomed Eng. 2019. PMID: 30883211 Review.
-
Online tools for bioinformatics analyses in nutrition sciences.Adv Nutr. 2012 Sep 1;3(5):654-65. doi: 10.3945/an.112.002477. Adv Nutr. 2012. PMID: 22983844 Free PMC article. Review.
-
Spatial Omics in Clinical Research: A Comprehensive Review of Technologies and Guidelines for Applications.Int J Mol Sci. 2025 Apr 22;26(9):3949. doi: 10.3390/ijms26093949. Int J Mol Sci. 2025. PMID: 40362187 Free PMC article. Review.
Cited by
-
Single-Cell RNA-Sequencing: Opening New Horizons for Breast Cancer Research.Int J Mol Sci. 2024 Aug 31;25(17):9482. doi: 10.3390/ijms25179482. Int J Mol Sci. 2024. PMID: 39273429 Free PMC article. Review.
-
Protocol to assess fatal embolism risks from human stem cells.STAR Protoc. 2023 May 1;4(2):102268. doi: 10.1016/j.xpro.2023.102268. Online ahead of print. STAR Protoc. 2023. PMID: 37133989 Free PMC article.
-
PGRMC2 influences the onset of postmenopausal osteoporosis through disulfidptosis in monocytes: Evidence from experimental validation and Mendelian randomization.Heliyon. 2024 Aug 19;10(17):e36570. doi: 10.1016/j.heliyon.2024.e36570. eCollection 2024 Sep 15. Heliyon. 2024. PMID: 39263088 Free PMC article.
-
Integrating Machine Learning with Multi-Omics Technologies in Geroscience: Towards Personalized Medicine.J Pers Med. 2024 Aug 31;14(9):931. doi: 10.3390/jpm14090931. J Pers Med. 2024. PMID: 39338186 Free PMC article. Review.
-
Single-Cell Sequencing: Genomic and Transcriptomic Approaches in Cancer Cell Biology.Int J Mol Sci. 2025 Feb 27;26(5):2074. doi: 10.3390/ijms26052074. Int J Mol Sci. 2025. PMID: 40076700 Free PMC article. Review.
References
REFERENCES
-
- Chen G, Ning B, Shi T. Single-Cell RNA-Seq technologies and related computational data analysis. Front Genet. 2019;10:317. https://doi.org/10.3389/fgene.2019.00317
-
- Method of the Year 2019: Single-cell multimodal omics. Method of the Year 2019: single-cell multimodal omics. Nature Methods. 2020;17(1):1-1. https://doi.org/10.1038/s41592-019-0703-5
-
- Aldridge S, Teichmann SA. Single cell transcriptomics comes of age. Nat Commun. 2020;11(1):4307. https://doi.org/10.1038/s41467-020-18158-5
-
- Lee J, Hyeon DY, Hwang D. Single-cell multiomics: technologies and data analysis methods. Exp Mol Med. 2020;52(9):1428-1442. https://doi.org/10.1038/s12276-020-0420-2
-
- Paolillo C, Londin E, Fortina P. Single-cell genomics. Clin Chem. 2019;65(8):972-985. https://doi.org/10.1373/clinchem.2017.283895
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources