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. 1987 Mar;3(1):37-43.
doi: 10.1093/bioinformatics/3.1.37.

HOMED: a homologous sequence editor

P A Stockwell  1 , G B Petersen
Affiliations

HOMED: a homologous sequence editor

P A Stockwell et al. Comput Appl Biosci. 1987 Mar.

Abstract

The alignment of homologous sequences with each other and their display has proved a difficult task, despite a frequent requirement for this process. HOMED enables related sequences to be edited and listed in parallel with each other. The editor function uses a full screen editor which emulates the text editors KED and EDT (on PDP-11 and VAX-11 respectively) and which can be adapted to emulate other text editors. This emulation has been adopted to simplify user learning of editing functions. HOMED provides functions for listing the sequences in a variety of formats and for generating a consensus sequence as well as providing a series of tools for maintenance of the sequence database. HOMED has been implemented in Pascal in a modular fashion to enhance portability.

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