A simple derivation of the mean of the Sackin index of tree balance under the uniform model on rooted binary labeled trees
- PMID: 34537229
- PMCID: PMC8629161
- DOI: 10.1016/j.mbs.2021.108688
A simple derivation of the mean of the Sackin index of tree balance under the uniform model on rooted binary labeled trees
Abstract
In mathematical phylogenetics, the Sackin index, measuring the sum of path lengths between leaves and the root, is one of the most frequently used measures of balance for phylogenetic trees. The uniform model, in which all rooted binary labeled trees for a given set of leaf labels are assumed to be equiprobable, is one of the most frequently used models for describing a probability distribution on the set of rooted binary labeled trees. This note provides a simple new derivation of the mean value of the Sackin index of tree balance under the uniform model on rooted binary labeled trees. The new derivation suggests a simple form of the mean Sackin index in terms of the Catalan numbers, quickly enabling a verification of the asymptotic value for the mean.
Keywords: Catalan numbers; Phylogenetics; Tree balance.
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.
Conflict of interest statement
Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
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References
-
- Aldous D. Probability distributions on cladograms. In Aldous D and Pemantle R, editors, Random Discrete Structures, pages 1–18. Springer-Verlag, New York, 1996.
-
- Bartoszek K, Coronado TM, Mir A, and Rosselló F. Squaring within the Colless index yields a better balance index. Mathematical Biosciences, 331:108503, 2021. - PubMed
-
- Blum MGB and François O. On statistical tests of phylogenetic tree imbalance: the Sackin and other indices revisited. Mathematical Biosciences, 195:141–153, 2005. - PubMed
-
- Blum MGB, François O, and Janson S. The mean, variance and limiting distribution of two statistics sensitive to phylogenetic tree balance. Annals of Applied Probability, 16:2195–2214, 2006.
-
- Cardona G, Mir A, and Rosselló F. Exact formulas for the variances of several balance indices under the Yule model. Journal of Mathematical Biology, 67:1833–1846, 2013. - PubMed
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