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. 2021 Oct;39(10):1178-1179.

doi: 10.1038/s41587-021-01069-1.

Ready-to-use public infrastructure for global SARS-CoV-2 monitoring

Wolfgang Maier¹, Simon Bray¹, Marius van den Beek², Dave Bouvier², Nathan Coraor², Milad Miladi¹, Babita Singh³, Jordi Rambla De Argila³, Dannon Baker⁴, Nathan Roach⁵, Simon Gladman⁶, Frederik Coppens^{7

8}, Darren P Martin⁹, Andrew Lonie⁶, Björn Grüning¹⁰, Sergei L Kosakovsky Pond¹¹, Anton Nekrutenko¹²

Affiliations

Affiliations

¹ University of Freiburg, Freiburg, Germany.
² The Pennsylvania State University, University Park, PA, USA.
³ GalaxyWorks Inc, Baltimore, MD, USA.
⁴ Centre for Genomic Regulation, Viral Beacon Project, Barcelona, Spain.
⁵ Johns Hopkins University, Baltimore, MD, USA.
⁶ University of Melbourne, Melbourne, Victoria, Australia.
⁷ Ghent University, Ghent, Belgium.
⁸ VIB Center for Plant Systems Biology, Ghent, Belgium.
⁹ University of Cape Town, Cape Town, South Africa.
¹⁰ University of Freiburg, Freiburg, Germany. gruening@informatik.uni-freiburg.de.
¹¹ Temple University, Philadelphia, PA, USA. spond@temple.edu.
¹² The Pennsylvania State University, University Park, PA, USA. aun1@psu.edu.

PMID: 34588690
PMCID: PMC8845060
DOI: 10.1038/s41587-021-01069-1

Ready-to-use public infrastructure for global SARS-CoV-2 monitoring

Wolfgang Maier et al. Nat Biotechnol. 2021 Oct.

. 2021 Oct;39(10):1178-1179.

doi: 10.1038/s41587-021-01069-1.

Authors

Wolfgang Maier¹, Simon Bray¹, Marius van den Beek², Dave Bouvier², Nathan Coraor², Milad Miladi¹, Babita Singh³, Jordi Rambla De Argila³, Dannon Baker⁴, Nathan Roach⁵, Simon Gladman⁶, Frederik Coppens^{7

8}, Darren P Martin⁹, Andrew Lonie⁶, Björn Grüning¹⁰, Sergei L Kosakovsky Pond¹¹, Anton Nekrutenko¹²

Affiliations

¹ University of Freiburg, Freiburg, Germany.
² The Pennsylvania State University, University Park, PA, USA.
³ GalaxyWorks Inc, Baltimore, MD, USA.
⁴ Centre for Genomic Regulation, Viral Beacon Project, Barcelona, Spain.
⁵ Johns Hopkins University, Baltimore, MD, USA.
⁶ University of Melbourne, Melbourne, Victoria, Australia.
⁷ Ghent University, Ghent, Belgium.
⁸ VIB Center for Plant Systems Biology, Ghent, Belgium.
⁹ University of Cape Town, Cape Town, South Africa.
¹⁰ University of Freiburg, Freiburg, Germany. gruening@informatik.uni-freiburg.de.
¹¹ Temple University, Philadelphia, PA, USA. spond@temple.edu.
¹² The Pennsylvania State University, University Park, PA, USA. aun1@psu.edu.

PMID: 34588690
PMCID: PMC8845060
DOI: 10.1038/s41587-021-01069-1

No abstract available

PubMed Disclaimer

Figures

Fig. 1 | — Fig. 1 |. Analysis flow for calling SARS-CoV-2 variants using Galaxy.
ONT, Oxford Nanopore Technologies; VCF, variant call format; TSV, tab-separated values; PE, paired end; SE, single end. For more information, see https://covid19.galaxyproject.org.

See this image and copyright information in PMC

Update of

Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring.
Maier W, Bray S, van den Beek M, Bouvier D, Coraor N, Miladi M, Singh B, De Argila JR, Baker D, Roach N, Gladman S, Coppens F, Martin DP, Lonie A, Grüning B, Kosakovsky Pond SL, Nekrutenko A. Maier W, et al. bioRxiv [Preprint]. 2021 Mar 25:2021.03.25.437046. doi: 10.1101/2021.03.25.437046. bioRxiv. 2021. Update in: Nat Biotechnol. 2021 Oct;39(10):1178-1179. doi: 10.1038/s41587-021-01069-1. PMID: 33791701 Free PMC article. Updated. Preprint.

References

1. Hodcroft EB et al. Nature 591, 30–33 (2021). - PubMed
1. Quick J et al. Nat. Protoc 12, 1261–1276 (2017). - PMC - PubMed
1. Grubaugh ND et al. Genome Biol. 20, 8 (2019). - PMC - PubMed
1. Baker D et al. PLoS Pathog. 16, e1008643 (2020). - PMC - PubMed
1. Jalili V et al. Nucleic Acids Res. 48 W1, W395–W402 (2020). - PMC - PubMed

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