Microbial adaptive evolution

doi:10.1093/jimb/kuab076

Review

. 2022 Apr 14;49(2):kuab076.

doi: 10.1093/jimb/kuab076.

Microbial adaptive evolution

Aiqin Shi¹, Feiyu Fan^{2

3

4}, James R Broach¹

Affiliations

¹ Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA.
² Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin, 300308, P.R. China.
³ Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, P.R. China.
⁴ National Innovation Center for Synthetic Biotechnology, Tianjin, 300308, P.R. China.

PMID: 34673973
PMCID: PMC9118994
DOI: 10.1093/jimb/kuab076

Review

Microbial adaptive evolution

Aiqin Shi et al. J Ind Microbiol Biotechnol. 2022.

. 2022 Apr 14;49(2):kuab076.

doi: 10.1093/jimb/kuab076.

Authors

Aiqin Shi¹, Feiyu Fan^{2

3

4}, James R Broach¹

Affiliations

¹ Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA.
² Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin, 300308, P.R. China.
³ Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, P.R. China.
⁴ National Innovation Center for Synthetic Biotechnology, Tianjin, 300308, P.R. China.

PMID: 34673973
PMCID: PMC9118994
DOI: 10.1093/jimb/kuab076

Abstract

Bacterial species can adapt to significant changes in their environment by mutation followed by selection, a phenomenon known as "adaptive evolution." With the development of bioinformatics and genetic engineering, research on adaptive evolution has progressed rapidly, as have applications of the process. In this review, we summarize various mechanisms of bacterial adaptive evolution, the technologies used for studying it, and successful applications of the method in research and industry. We particularly highlight the contributions of Dr. L. O. Ingram. Microbial adaptive evolution has significant impact on our society not only from its industrial applications, but also in the evolution, emergence, and control of various pathogens.

Keywords: Adaptive evolution mechanisms; Adaptive metabolic evolution; Bacteria.

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Figures

**Fig. 1.**
Microbial adaptive evolution application.

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References

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[1] Agostini F., Sinn L., Petras D., Schipp C. J., Kubyshkin V., Berger A. A., Dorrestein P. C., Rappsilber J., Budisa N., Koksch B. (2021). Multiomics analysis provides insight into the laboratory evolution of Escherichia coli toward the metabolic usage of fluorinated indoles. ACS Central Science, 7, 81–92. 10.1021/acscentsci.0c00679 - DOI - PMC - PubMed

[2] Agostini F., Sinn L., Petras D., Schipp C. J., Kubyshkin V., Berger A. A., Dorrestein P. C., Rappsilber J., Budisa N., Koksch B. (2021). Multiomics analysis provides insight into the laboratory evolution of Escherichia coli toward the metabolic usage of fluorinated indoles. ACS Central Science, 7, 81–92. 10.1021/acscentsci.0c00679 - DOI - PMC - PubMed

[3] Andersson D. I., Slechta E. S., Roth J. R. (1998). Evidence that gene amplification underlies adaptive mutability of the bacterial lac operon. Science, 282, 1133–1135 - PubMed

[4] Andersson D. I., Slechta E. S., Roth J. R. (1998). Evidence that gene amplification underlies adaptive mutability of the bacterial lac operon. Science, 282, 1133–1135 - PubMed

[5] Ayala F. J. (1977). “Nothing in biology makes sense except in the light of evolution”: Theodosius Dobzhansky: 1900–1975. Journal of Heredity, 68, 3–10. 10.1093/oxfordjournals.jhered.a108767 - DOI - PubMed

[6] Ayala F. J. (1977). “Nothing in biology makes sense except in the light of evolution”: Theodosius Dobzhansky: 1900–1975. Journal of Heredity, 68, 3–10. 10.1093/oxfordjournals.jhered.a108767 - DOI - PubMed

[7] Bailey S. F., Blanquart F., Bataillon T., Kassen R. (2017). What drives parallel evolution? How population size and mutational variation contribute to repeated evolution. Bioessays, 39, 1–9. 10.1002/bies.201600176 - DOI - PubMed

[8] Bailey S. F., Blanquart F., Bataillon T., Kassen R. (2017). What drives parallel evolution? How population size and mutational variation contribute to repeated evolution. Bioessays, 39, 1–9. 10.1002/bies.201600176 - DOI - PubMed

[9] Bergthorsson U., Andersson D. I., Roth J. R. (2007). Ohno's dilemma: Evolution of new genes under continuous selection. Proceedings of the National Academy of Sciences, 104, 17004–17009. 10.1073/pnas.0707158104 - DOI - PMC - PubMed

[10] Bergthorsson U., Andersson D. I., Roth J. R. (2007). Ohno's dilemma: Evolution of new genes under continuous selection. Proceedings of the National Academy of Sciences, 104, 17004–17009. 10.1073/pnas.0707158104 - DOI - PMC - PubMed

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Microbial adaptive evolution

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Microbial adaptive evolution

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