Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2022 Jun;91(6):1064-1072.
doi: 10.1111/1365-2656.13619. Epub 2021 Nov 8.

Harnessing the power of multi-omics data for predicting climate change response

Affiliations

Harnessing the power of multi-omics data for predicting climate change response

Kara K S Layton et al. J Anim Ecol. 2022 Jun.

Abstract

Predicting how species will respond to future climate change is of central importance in the midst of the global biodiversity crisis, and recent work has demonstrated the utility of population genomics for improving these predictions. Here, we suggest a broadening of the approach to include other types of genomic variants that play an important role in adaptation, like structural (e.g. copy number variants) and epigenetic variants (e.g. DNA methylation). These data could provide additional power for forecasting response, especially in weakly structured or panmictic species. Incorporating structural and epigenetic variation into estimates of climate change vulnerability, or maladaptation, may not only improve prediction power but also provide insight into the molecular mechanisms underpinning species' response to climate change.

Keywords: epigenetic variation; forecasting; genomic offset; panmixia; structural variation.

PubMed Disclaimer

References

REFERENCES
    1. Anastasiadi, D., Venney, C. J., Bernatchez, L., & Wellenreuther, M. (2021). Epigenetic inheritance and reproductive mode in plants and animals. Trends in Ecology & Evolution, in press. https://doi.org/10.1016/j.tree.2021.08.006
    1. Angers, B., Perez, M., Menicucci, T., & Leung, C. (2020). Sources of epigenetic variation and their applications in natural populations. Evolutionary Applications, 13, 1262-1278.
    1. Assis, J., Tyberghein, L., Bosch, S., Verbruggen, H., Serrão, E., & Clerck, O. (2018). Bio-ORACLE v2.0: Extending marine data layers for bioclimatic modelling. Global Ecology and Biogeography, 27, 277-284.
    1. Bay, R. A., Harrigan, R. J., Le Underwood, V., Lisle Gibbs, H., Smith, T. B., & Ruegg, K. (2018). Genomic signals of selection predict climate-driven population declines in a migratory bird. Science, 359, 83-86.
    1. Bell, J. T., Pai, A. A., Pickrell, J. K., Gaffney, D. J., Pique-Regi, R., Degner, J. F., Gilad, Y., & Pritchard, J. K. (2011). DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biology, 12, R10.
DATA SOURCES
    1. Geng, Y. et al. (2020). Increased epigenetic diversity and transient epigenetic memory in response to salinity stress in Thlaspi arvense. Ecology and Evolution, 10, 11622-11630.
    1. Alsdurf, J., Anderson, C., & Siemens, D. H. (2016). Epigenetics of drought-induced trans-generational plasticity: Consequences for range limit development. Aob Plants, 8, plv146.
    1. Van Dooren, T. J. M., Silveira, A. B., Gilbault, E., Jiménez-Gómez, J. M., Martin, A., Bach, L., Tisné, S., Quadrana, L., Loudet, O., & Colot, V. (2020). Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects. Journal of Experimental Botany, 71, 3588-3602.
    1. Ganguly, D. R., Crisp, P. A., Eichten, S. R., & Pogson, B. J. (2017). The Arabidopsis DNA methylome is stable under transgenerational drought stress. Plant Physiology, 175, 1893-1912.
    1. Dewan, S., De Frenne, P., Vanden Broeck, A. N., Steenackers, M., Vander Mijnsbrugge, K., & Verheyen, K. (2018). Transgenerational effects in asexually reproduced offspring of Populus. PLoS ONE, 13, e0208591.

LinkOut - more resources