Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2022:2316:143-151.
doi: 10.1007/978-1-0716-1464-8_13.

Detection of Viroids by RT-PCR

Affiliations

Detection of Viroids by RT-PCR

Nerida J Donovan et al. Methods Mol Biol. 2022.

Abstract

Reverse transcription-polymerase chain reaction (RT-PCR) is an effective method for detecting the presence of viroids in plant tissue. Viroid RNA is converted to cDNA and amplified to detectable levels, making it a fast and useful detection tool, even when the viroid is present at low levels. Methods of viroid detection using conventional RT-PCR are described in this chapter.

Keywords: Gel electrophoresis; Primers; Reverse transcription-polymerase chain reaction (RT-PCR); Viroid detection.

PubMed Disclaimer

References

    1. Hadidi A, Yang X (1990) Detection of pome fruit viroids by enzymatic cDNA amplification. J Virol Methods 30:261–270 - DOI
    1. Bernad L, Duran-Vila N (2006) A novel RT-PCR approach for detection and characterization of citrus viroids. Mol Cell Probes 20:105–113 - DOI
    1. Chiumenti M, Torchetti EM, Di Serio F, Minafra A (2014) Identification and characterization of a viroid resembling apple dimple fruit viroid in fig (Ficus carica L.) by next generation sequencing of small RNAs. Virus Res 188:54–59 - DOI
    1. Serio FD, Malfitano M, Alioto D, Flores AR (2002) Apple dimple fruit viroid: sequence variability and its specific detection by multiplex fluorescent RT-PCR in the presence of apple scar skin viroid. J Plant Pathol 84:27–34
    1. Navarro B, Pantaleo V, Gisel A, Moxon S, Dalmay T, Bisztray G, Di Serio F, Burgyan J (2009) Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction. PLoS One 4(11):e7686. https://doi.org/10.1371/journal.pone.0007686 - DOI - PubMed - PMC

LinkOut - more resources