Cell-Free Biosensors and AI Integration
- PMID: 34985753
- DOI: 10.1007/978-1-0716-1998-8_19
Cell-Free Biosensors and AI Integration
Abstract
Cell-free biosensors hold a great potential as alternatives for traditional analytical chemistry methods providing low-cost low-resource measurement of specific chemicals. However, their large-scale use is limited by the complexity of their development.In this chapter, we present a standard methodology based on computer-aided design (CAD ) tools that enables fast development of new cell-free biosensors based on target molecule information transduction and reporting through metabolic and genetic layers, respectively. Such systems can then be repurposed to represent complex computational problems, allowing defined multiplex sensing of various inputs and integration of artificial intelligence in synthetic biological systems.
Keywords: Artificial neural networks; CAD; Machine learning; Metabolite biosensors; Perceptron; Transcription factors.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.
References
-
- van der Meer JR, Belkin S (2010) Where microbiology meets microengineering: design and applications of reporter bacteria. Nat Rev Microbiol 8:511–522. https://doi.org/10.1038/nrmicro2392 - DOI - PubMed
-
- Chang H-J, Voyvodic PL, Zúñiga A, Bonnet J (2017) Microbially derived biosensors for diagnosis, monitoring and epidemiology. Microb Biotechnol 10:1031–1035. https://doi.org/10.1111/1751-7915.12791 - DOI - PubMed - PMC
-
- Rodriguez-Mozaz S, de Alda MJL, Marco M-P, Barceló D (2005) Biosensors for environmental monitoring: a global perspective. Talanta 65:291–297. https://doi.org/10.1016/j.talanta.2004.07.006 - DOI - PubMed
-
- Koch M, Pandi A, Borkowski O et al (2019) Custom-made transcriptional biosensors for metabolic engineering. Curr Opin Biotechnol 59:78–84. https://doi.org/10.1016/j.copbio.2019.02.016 - DOI - PubMed
-
- Zhang L, Guo W, Lu Y (2020) Advances in cell-free biosensors: principle, mechanism, and applications. Biotechnol J 15:2000187. https://doi.org/10.1002/biot.202000187 - DOI
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