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Published Erratum
. 2022 Feb 24;14(1):22.
doi: 10.1186/s13073-022-01028-8.

Correction to: Whole genome sequencing-based classifcation of human-related Haemophilus species and detection of antimicrobial resistance genes

Margo Diricks  1   2 , Thomas A Kohl  1   2 , Nadja Käding  3   4 , Vladislav Leshchinskiy  3 , Susanne Hauswaldt  3 , Omar Jiménez Vázquez  1 , Christian Utpatel  1   2 , Stefan Niemann #  1   2 , Jan Rupp #  3   4 , Matthias Merker #  5   6   7
Affiliations
Published Erratum

Correction to: Whole genome sequencing-based classifcation of human-related Haemophilus species and detection of antimicrobial resistance genes

Margo Diricks et al. Genome Med. .
No abstract available

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Figures

Fig. 2
Fig. 2
Decision algorithm to classify human-related strains of Haemophilus spp. based on whole genome sequencing data. The number next to the arrow specifies the minimum number of marker genes that needs to be detected before a (sub) species tag is attributed to the strain
Fig. 3
Fig. 3
Phylogeny of 262 clinical Haemophilus spp. isolates from a German cohort. The phylogenetic tree is based on the alignment of 104 core genes (present in at least 90% of the strains). A Kraken2 read classification output. The length of a bar is proportional to the percentage of reads that are assigned to the respective taxon (as indicated by the color). One H. influenzae culture (located in the phylogenetic tree in the “fuzzy” clade) was likely contaminated with a Streptococcus sp. strain (19% of the reads assigned to this species) and another one with an Aggregatibacter sp. strain (52% reads assigned to this species). B Presence/absence of marker genes included in our new taxonomic classification database. C Final classification output of the decision algorithm. Mixed colors represent the presence of multiple full marker patterns, indicating multiple distinct Haemophilus species. D Presence/absence of antibiotic resistance genes included in a public resistance database. Color codes correlate to the antibiotic class to which the gene confers resistance: aminoglycosides (Agly), β-lactam antibiotics (Bla), phenicols (Phe), trimethoprim (Tmt), macrolide-lincosamide-streptogramin (MLS), sulfonamides (Sul), and tetracyclines (Tet)
See this image and copyright information in PMC

Erratum for

References

    1. Diricks M, et al. Whole genome sequencing-based classifcation of human-related Haemophilus species and detection of antimicrobial resistance genes. Genome Med. 2022;14:13. doi: 10.1186/s13073-022-01017-x. - DOI - PMC - PubMed

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