Editorial: Genome-Wide Analyses of Pectobacterium and Dickeya Species

doi:10.3389/fpls.2022.855262

Editorial

. 2022 Mar 3:13:855262.

doi: 10.3389/fpls.2022.855262. eCollection 2022.

Editorial: Genome-Wide Analyses of Pectobacterium and Dickeya Species

Mohammad Arif¹, Robert Czajkowski², Toni A Chapman³

Affiliations

¹ Department of Plant and Environmental Protection Sciences, University of Hawaii at Manoa, Honolulu, HI, United States.
² Laboratory of Biologically Active Compounds, Intercollegiate Faculty of Biotechnology UG and MUG, University of Gdansk, Gdańsk, Poland.
³ Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute (EMAI), Menangle, NSW, Australia.

PMID: 35317016
PMCID: PMC8934395
DOI: 10.3389/fpls.2022.855262

Editorial

Editorial: Genome-Wide Analyses of Pectobacterium and Dickeya Species

Mohammad Arif et al. Front Plant Sci. 2022.

. 2022 Mar 3:13:855262.

doi: 10.3389/fpls.2022.855262. eCollection 2022.

Authors

Mohammad Arif¹, Robert Czajkowski², Toni A Chapman³

Affiliations

¹ Department of Plant and Environmental Protection Sciences, University of Hawaii at Manoa, Honolulu, HI, United States.
² Laboratory of Biologically Active Compounds, Intercollegiate Faculty of Biotechnology UG and MUG, University of Gdansk, Gdańsk, Poland.
³ Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute (EMAI), Menangle, NSW, Australia.

PMID: 35317016
PMCID: PMC8934395
DOI: 10.3389/fpls.2022.855262

No abstract available

Keywords: Dickeya; Pectobacterium; comparative genomics; genome-wide; pectinolytic bacteria; soft rot and blackleg disease.

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Conflict of interest statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Comment on

Editorial on the Research Topic Genome-Wide Analyses of Pectobacterium and Dickeya Species

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Czajkowski R, Arif M, Chapman T. Czajkowski R, et al. Front Plant Sci. 2023 Jun 2;14:1224293. doi: 10.3389/fpls.2023.1224293. eCollection 2023. Front Plant Sci. 2023. PMID: 37332713 Free PMC article. No abstract available.
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References

1. Adeolu M., Alnajar S., Naushad S., Gupta R. S. (2016). Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Int. J. Syst. Evol. Microbiol. 66, 5575–5599. 10.1099/ijsem.0.001485 - DOI - PubMed
1. Agrios G. N.. (2006). Bacterial Soft Rots, 5th Edn. San Diego, CA: Academic Press.
1. Arizala D., Arif M. (2019). Genome-wide analyses revealed remarkable heterogeneity in pathogenicity determinants, antimicrobial compounds, and CRISPR-Cas systems of complex phytopathogenic genus Pectobacterium. Pathogens. 8, 247. 10.3390/pathogens8040247 - DOI - PMC - PubMed
1. Babujee L., Apodaca J., Balakrishnan V., Liss P., Kiley P. J., Charkowski A. O., et al. (2012). Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria. BMC Genom. 13, 110. 10.1186/1471-2164-13-110 - DOI - PMC - PubMed
1. Boluk G., Arizala D., Dobhal S., Zhang J., Hu J., Alvarez A. M., et al. (2021). Genomic and phenotypic biology of novel strains of Dickeya zeae isolated from pineapple and taro in Hawaii: insights into genome plasticity, pathogenicity, and virulence determinants. Front. Plant Sci. 12, 663851. 10.3389/fpls.2021.663851 - DOI - PMC - PubMed

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[1] Adeolu M., Alnajar S., Naushad S., Gupta R. S. (2016). Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Int. J. Syst. Evol. Microbiol. 66, 5575–5599. 10.1099/ijsem.0.001485 - DOI - PubMed

[2] Adeolu M., Alnajar S., Naushad S., Gupta R. S. (2016). Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Int. J. Syst. Evol. Microbiol. 66, 5575–5599. 10.1099/ijsem.0.001485 - DOI - PubMed

[3] Agrios G. N.. (2006). Bacterial Soft Rots, 5th Edn. San Diego, CA: Academic Press.

[4] Agrios G. N.. (2006). Bacterial Soft Rots, 5th Edn. San Diego, CA: Academic Press.

[5] Arizala D., Arif M. (2019). Genome-wide analyses revealed remarkable heterogeneity in pathogenicity determinants, antimicrobial compounds, and CRISPR-Cas systems of complex phytopathogenic genus Pectobacterium. Pathogens. 8, 247. 10.3390/pathogens8040247 - DOI - PMC - PubMed

[6] Arizala D., Arif M. (2019). Genome-wide analyses revealed remarkable heterogeneity in pathogenicity determinants, antimicrobial compounds, and CRISPR-Cas systems of complex phytopathogenic genus Pectobacterium. Pathogens. 8, 247. 10.3390/pathogens8040247 - DOI - PMC - PubMed

[7] Babujee L., Apodaca J., Balakrishnan V., Liss P., Kiley P. J., Charkowski A. O., et al. (2012). Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria. BMC Genom. 13, 110. 10.1186/1471-2164-13-110 - DOI - PMC - PubMed

[8] Babujee L., Apodaca J., Balakrishnan V., Liss P., Kiley P. J., Charkowski A. O., et al. (2012). Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria. BMC Genom. 13, 110. 10.1186/1471-2164-13-110 - DOI - PMC - PubMed

[9] Boluk G., Arizala D., Dobhal S., Zhang J., Hu J., Alvarez A. M., et al. (2021). Genomic and phenotypic biology of novel strains of Dickeya zeae isolated from pineapple and taro in Hawaii: insights into genome plasticity, pathogenicity, and virulence determinants. Front. Plant Sci. 12, 663851. 10.3389/fpls.2021.663851 - DOI - PMC - PubMed

[10] Boluk G., Arizala D., Dobhal S., Zhang J., Hu J., Alvarez A. M., et al. (2021). Genomic and phenotypic biology of novel strains of Dickeya zeae isolated from pineapple and taro in Hawaii: insights into genome plasticity, pathogenicity, and virulence determinants. Front. Plant Sci. 12, 663851. 10.3389/fpls.2021.663851 - DOI - PMC - PubMed

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Editorial: Genome-Wide Analyses of Pectobacterium and Dickeya Species

Affiliations

Editorial: Genome-Wide Analyses of Pectobacterium and Dickeya Species

Authors

Affiliations

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