Response to the letter to the editor: On the feasibility of dynamical analysis of network models of biochemical regulation

Felix M Weidner^{1

2}, Julian D Schwab¹, Silke D Werle¹, Nensi Ikonomi^{1

2}, Ludwig Lausser¹, Hans A Kestler¹

Affiliations

¹ Institute of Medical Systems Biology, Ulm University, 89081 Ulm, Germany.
² International Graduate School of Molecular Medicine, Ulm University, 89081 Ulm, Germany.

Comment

Felix M Weidner et al. Bioinformatics. 2022.

. 2022 Jul 11;38(14):3676.

doi: 10.1093/bioinformatics/btac318.

Felix M Weidner^{1

2}, Julian D Schwab¹, Silke D Werle¹, Nensi Ikonomi^{1

2}, Ludwig Lausser¹, Hans A Kestler¹

¹ Institute of Medical Systems Biology, Ulm University, 89081 Ulm, Germany.
² International Graduate School of Molecular Medicine, Ulm University, 89081 Ulm, Germany.

No abstract available

Comment on

Capturing dynamic relevance in Boolean networks using graph theoretical measures.
Weidner FM, Schwab JD, Werle SD, Ikonomi N, Lausser L, Kestler HA. Weidner FM, et al. Bioinformatics. 2021 Oct 25;37(20):3530-3537. doi: 10.1093/bioinformatics/btab277. Bioinformatics. 2021. PMID: 33983406 Free PMC article.
On the feasibility of dynamical analysis of network models of biochemical regulation.
Rocha LM. Rocha LM. Bioinformatics. 2022 Jul 11;38(14):3674-3675. doi: 10.1093/bioinformatics/btac360. Bioinformatics. 2022. PMID: 35640987 Free PMC article. No abstract available.

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1. Schwab J.D., Kestler H.A. (2018) Automatic screening for perturbations in Boolean networks. Front. Physiol., 9, 431. - PMC - PubMed
1. Schwab J.D. et al. (2021) Reconstructing Boolean network ensembles from single-cell data for unraveling dynamics in the aging of human hematopoietic stem cells. Comput. Struct. Biotechnol. J., 19, 5321–5332. - PMC - PubMed
1. Weidner F.M. et al. (2021) Capturing dynamic relevance in Boolean networks using graph theoretical measures. Bioinformatics, 37, 3530–3537. - PMC - PubMed