Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2022 May 14:9:101728.
doi: 10.1016/j.mex.2022.101728. eCollection 2022.

Collecting wood core samples from Macassar ebony (Diospyros celebica Bakh.) for multi-purpose analysis using pickering punch

Affiliations

Collecting wood core samples from Macassar ebony (Diospyros celebica Bakh.) for multi-purpose analysis using pickering punch

Iskandar Zulkarnaen Siregar et al. MethodsX. .

Abstract

Sample collection activities for a study of population genetics across the natural distribution of targeted tree species require a lot of resources, mainly if repeated field visits are necessary. Conventionally, population genetic studies use good sample material like leaves. In addition, cambium or small pieces of fresh wood can be used to replace leaf samples. Currently, restrictions from the permit regulation have caused only a limited number of samples that can be collected. Therefore, efficient use of samples must be designed to maximize their uses for research. Due to the small amount of successfully sampled materials, hence there are limitations to extend their uses for other analyses and are often sufficient only for genetic analysis. Therefore, innovation in sampling methods using pickering punch (https://www.agroisolab.com/pickering-punch) to collect ebony wood cores in this study is required to cover multi-analyses not only limited to genetics but also for other analyses such as isotopes, near-infrared spectroscopy (NIRs), anatomy, and chemical compounds.•Pickering punch is recommended for efficient wood core sample collection from ebony standing trees.•323 wood core samples were successfully collected from 16 natural populations across Celebes (Sulawesi).•Multi-analyses studies on sampled wood cores are possible for ebony wood identification (e.g., species and origin/provenance).

Keywords: Ebony; Pickering punch; Wood Core.

PubMed Disclaimer

Figures

Image, graphical abstract
Graphical abstract
Fig 1
Fig. 1
Flowchart of the innovative collection of wood core samples from ebony.
Fig 2
Fig. 2
Steps on wood core extraction.
Fig 3
Fig. 3
Wood core in a plastic zip lock bag (12 cm x 20 cm).
Fig 4
Fig. 4
Wood core extracted using the pickering punch.

References

    1. Darmawan W., Rahayu I., Lumongga D., Putri R.L., Mubarok M., Gerardin P. Selected properties of Macassar ebony (Diospyros celebica from plantation. J. Trop. Forest Sci. 2021;33(1):1–10. doi: 10.26525/jtfs2021.33.1.1. - DOI
    1. Chase M.W., Hills H.H. Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon. 1991;40:215–220. doi: 10.2307/1222975. - DOI
    1. Luo A., Lan H., Ling C., Zhang A., Shi L., Ho S.Y.W., Zhu C. A simulation study of sample size for DNA barcoding. Ecol. Evol. 2015;5(24):5869–5879. doi: 10.1002/ece3.1846. - DOI - PMC - PubMed
    1. Siregar I.Z., Dwiyanti F.G., Pratama R., Matra D.D., Majiidu M. Generating long-read sequences using Oxford Nanopore Technology from Diospyros celebica genomic DNA. BMC Res. Notes. 2021;14(75) doi: 10.1186/s13104-021-05484-0. - DOI - PMC - PubMed
    1. Karlinasari L., Noviyanti N., Purwanto Y.A., Majiidu M., Dwiyanti F.G., Rafi M., Damayanti R., Harnelly E., Siregar I.Z. Discrimination and Determination of Extractive Content of Ebony (Diospyros celebica Bakh.) from Celebes Island by Near-Infrared Spectroscopy. Forests. 2021;12(1):6. doi: 10.3390/f12010006. - DOI

LinkOut - more resources