Serial-Omics and Molecular Function Study Provide Novel Insight into Cucumber Variety Improvement

Abstract

Cucumbers are rich in vitamins and minerals. The cucumber has recently become one of China's main vegetable crops. More specifically, the adjustment of the Chinese agricultural industry's structure and rapid economic development have resulted in increases in the planting area allocated to Chinese cucumber varieties and in the number of Chinese cucumber varieties. After complete sequencing of the "Chinese long" genome, the transcriptome, proteome, and metabolome were obtained. Cucumber has a small genome and short growing cycle, and these traits are conducive to the application of molecular breeding techniques for improving fruit quality. Here, we review the developments and applications of molecular markers and genetic maps for cucumber breeding and introduce the functions of gene families from the perspective of genomics, including fruit development and quality, hormone response, resistance to abiotic stress, epitomizing the development of other omics, and relationships among functions.

Keywords: breeding; cucumbers; molecular marker; omics; trait regulation.

Figure 1

Protein–protein interaction (PPI) network of salt tolerance in cucumber. (a) PPI network. (b) Distribution of PPI network node degree. (c) Distribution of PPI network edge reliability.