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. 2022 Jun 10:43:108372.
doi: 10.1016/j.dib.2022.108372. eCollection 2022 Aug.

Taxonomic and functional profiles of Coffea canephora endophytic microbiome in the Central Highlands region, Vietnam, revealed by analysis of 16S rRNA metagenomics sequence data

Dinh Minh Tran  1
Affiliations

Taxonomic and functional profiles of Coffea canephora endophytic microbiome in the Central Highlands region, Vietnam, revealed by analysis of 16S rRNA metagenomics sequence data

Dinh Minh Tran. Data Brief. .

Abstract

Vietnam is the largest producer of Robusta coffee (Coffea canephora L.) [1]. Among regions in Vietnam, the Central Highlands is the capital of the coffee plantation and production [2]. Previous works have established a dataset of rhizospheric microbial diversity and its functionality to develop sustainable Robusta coffee production techniques in this region [3], [4], [5], [6]; however, a dataset of the endophytic microbiome of this plant species has been found is still unknown. The work presented here is the first report on the microbial and functional diversity of the endophytic microbiome of Coffea canephora L. grown in the region. A representative root sample was obtained by mixing five different root samples collected from a 6-year-old Robusta coffee field in Dak Lak Province, the Central Highlands, on 30 October 2021. After that, 16S rRNA metagenomic next-generation sequencing was conducted on the sample using the Illumina MiSeq platform. The raw sequence of endophytic microbiome data in this work was uploaded in Fastq format on NCBI with Bioproject PRJNA821717 and can be accessed at https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA821717. The dataset can be useful for understanding basic information about the prokaryotic ecology of this important plant in the Central Highlands, Vietnam. The data can also be valuable for developing cultivation techniques for sustainable Coffea canephora L. production by applying indigenous microbial resources.

Keywords: Coffea canephora L.; Endophytic microbiome dataset; The Central Highlands; metagenomic next-generation sequencing.

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Conflict of interest statement

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Figures

Fig 1
Fig. 1
Taxonomic profiles of the endophytic microbiome of Coffea canephora in the Central Highlands region, Vietnam.
Fig 2
Fig. 2
Taxonomic profiles of the endophytic and rhizospheric microbiome in the root of Coffea canephora in the Central Highlands region, Vietnam.
Fig 3
Fig. 3
Functional profiles of the endophytic microbiome of Coffea canephora in the Central Highlands region, Vietnam.
Fig 4
Fig. 4
Functional profiles of the endophytic and rhizospheric microbiome in the root of Coffea canephora in the Central Highlands region, Vietnam.
See this image and copyright information in PMC

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