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. 2022 Jun 24:9:934401.
doi: 10.3389/fmolb.2022.934401. eCollection 2022.

Metabolomic Investigation of Citrus latifolia and the Putative Role of Coumarins in Resistance to Black Spot Disease

Hocelayne Paulino Fernandes  1   2 , Luis Francisco Salomé-Abarca  2 , Rosana Gonçalves Pereira  3 , Janaína Brandão Seibert  1 , Geraldo José Silva-Junior  3 , Maria Fátima Das Graças Fernandes da Silva  1 , Young Hae Choi  2   4
Affiliations

Metabolomic Investigation of Citrus latifolia and the Putative Role of Coumarins in Resistance to Black Spot Disease

Hocelayne Paulino Fernandes et al. Front Mol Biosci. .

Abstract

Citrus black spot (CBS) is a disease caused by the fungus Phyllosticta citricarpa that affects citrus plants, causing fruit blemish and premature drop that result in severe economic losses in commercial citrus orchards. However, CBS symptoms and effects may vary depending on the citrus species: Citrus limon (lemon) is susceptible and highly affected by the disease, while no CBS-related damage has ever been observed for Citrus latifolia (Tahiti lime), implying that it must be resistant to the disease. The difference in the response to this disease provided the opportunity to gain insight into the metabolites responsible for the resistance by comparison of the metabolomic profiles of these two citrus species. Metabolic variations of C. limon and C. latifolia inoculated with P. citricarpa were analyzed using various metabolomic-based platforms including 1H NMR for overall metabolic profiling, and LC-MS and HPTLC for targeted analysis. The 1H NMR spectra of the samples demonstrated that certain phenolics were strongly induced after pathogenic inoculation, especially in the resistant species. The induced phenolics were identified from C. latifolia by further 1H NMR, LCMS and HPTLC analysis yielding six prenylated and methoxy coumarins, i.e., 5,7-dimethoxycoumarin, 5-geranyloxy-7-methoxycoumarin, 7-geranyloxycoumarin, 8-methoxypsoralen, 5,8-dimethoxypsoralen and 5-geranyloxypsoralen. These isolated coumarins and a coumarin-rich fraction were tested against the fungal pathogen, P. citricarpa, to evaluate their activity. None of the individual coumarins exhibited a significant inhibition, while the coumarin fraction exhibited a strong antifungal activity suggesting a synergistic interaction of its components. To obtain further insight into the roles of these compounds in the plant defense, the possible mechanisms of the individual coumarins were tested using an in-silico model, the PASS Online Tool; the analysis showed that each coumarin appeared to have a unique defense mechanism, even with very slight variations in the chemical structures. The results could provide evidence of the existence of a complex plant defense mechanism consisting in a multitude of synergistic interactions between compounds.

Keywords: citrus; coumarins; metabolomics; pant defense; pathogen.

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Conflict of interest statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Figures

FIGURE 1
FIGURE 1
Typical 1H NMR (600 MHz in CH3OH-d 4 ) spectra of Citrus latifolia and Citrus limon species in the range of δ 5.0–8.5.
FIGURE 2
FIGURE 2
Comparison of 1H NMR spectra of hesperetin, hesperidin, naringenin, naringin, quercetin and rutin (600 MHz in CH3OH-d 4 ) in the range δ 5.7–6.5 for H-6 and H-8.
FIGURE 3
FIGURE 3
Principal component analysis of Citrus limon (S) and Citrus latifolia (R). Score plot using PC1 and PC2 (A) and loading plot of PC1 (B).
FIGURE 4
FIGURE 4
Orthogonal partial least square analysis – discriminant analysis of 1H NMR spectra of Citrus latifolia and Citrus limon for the inoculation effect (A) orthogonal partial least square analysis of the same dataset for the days post inoculation (dpi) effect (B), and shared and unique structures (SUS)-plot for the inoculation (X-axis) and dpi (Y-axis) effect (C) of the same dataset. In Figure 4C, malic acid (•). flavanones (•), coumarins (•).
See this image and copyright information in PMC

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