Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2022 Aug;22(15-16):e2100330.
doi: 10.1002/pmic.202100330. Epub 2022 Jul 18.

Targeted proteomics on its way to discovery

Affiliations
Review

Targeted proteomics on its way to discovery

Marta L Mendes et al. Proteomics. 2022 Aug.

Abstract

For a long time, targeted and discovery proteomics covered different corners of the detection spectrum, with targeted proteomics focused on small target sets. This changed with the recent advances in highly multiplexed analysis. While discovery proteomics still pushes higher numbers of identified and quantified proteins, the advances in targeted proteomics rose to cover large parts of less complex proteomes or proteomes with low protein detection counts due to dynamic range restrictions, like the blood proteome. These new developments will impact, especially on the field of biomarker discovery and the possibility of using targeted proteomics for diagnostic purposes.

Keywords: DIA; PRM; multiplexing; proteomics; targeted proteomics.

PubMed Disclaimer

References

REFERENCES

    1. Aebersold, R., & Mann, M. (2016). Mass-spectrometric exploration of proteome structure and function. Nature, 537, 347-355.
    1. Ludwig, C., Gillet, L., Rosenberger, G., Amon, S., Collins, B. C., & Aebersold, R. (2018). Data-independent acquisition-based SWATH - MS for quantitative proteomics: A tutorial. Molecular Systems Biology, 14, 11-24.
    1. Bruderer, R., Bernhardt, O. M., Gandhi, T., Miladinović, S. M., Cheng, L.-Y., Messner, S., Ehrenberger, T., Zanotelli, V., Butscheid, Y., Escher, C., Vitek, O., Rinner, O., & Reiter, L. (2015). Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues. Molecular & Cellular Proteomics, 14, 1400-1410.
    1. Lange, V., Picotti, P., Domon, B., & Aebersold, R. (2008). Selected reaction monitoring for quantitative proteomics: A tutorial. Molecular Systems Biology, 4, 1-14.
    1. Gallien, S., & Domon, B. (2015). Advances in high-resolution quantitative proteomics: Implications for clinical applications. Expert Review of Proteomics, 12, 489-498.