Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2022 Jul 8:13:947129.
doi: 10.3389/fpls.2022.947129. eCollection 2022.

Research Advances and Prospects of Orphan Genes in Plants

Affiliations
Review

Research Advances and Prospects of Orphan Genes in Plants

Mingliang Jiang et al. Front Plant Sci. .

Abstract

Orphan genes (OGs) are defined as genes having no sequence similarity with genes present in other lineages. OGs have been regarded to play a key role in the development of lineage-specific adaptations and can also serve as a constant source of evolutionary novelty. These genes have often been found related to various stress responses, species-specific traits, special expression regulation, and also participate in primary substance metabolism. The advancement in sequencing tools and genome analysis methods has made the identification and characterization of OGs comparatively easier. In the study of OG functions in plants, significant progress has been made. We review recent advances in the fast evolving characteristics, expression modulation, and functional analysis of OGs with a focus on their role in plant biology. We also emphasize current challenges, adoptable strategies and discuss possible future directions of functional study of OGs.

Keywords: functions; identification; orphan genes; plant; prospects; research advances.

PubMed Disclaimer

Conflict of interest statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Figures

FIGURE 1
FIGURE 1
Current challenges, adoptable strategies, and possible future directions of functional study of orphan genes (OGs).

Similar articles

Cited by

References

    1. Amiri H., Davids W., Andersson S. G. (2003). Birth and death of orphan genes in Rickettsia. Mol. Biol. Evol. 20 1575–1587. 10.1093/molbev/msg175 - DOI - PubMed
    1. Aoki Y., Okamura Y., Tadaka S., Kinoshita K., Obayashi T. (2016). ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression. Plant Cell Physiol. 57:e5. 10.1093/pcp/pcv165 - DOI - PMC - PubMed
    1. Arendsee Z. W., Li L., Wurtele E. S. (2014). Coming of age: orphan genes in plants. Trends Plant Sci. 19 698–708. 10.1016/j.tplants.2014.07.003 - DOI - PubMed
    1. Bai M., Yuan J., Kuang H., Gong P., Li S., Zhang Z., et al. (2020). Generation of a multiplex mutagenesis population via pooled CRISPR-Cas9 in soya bean. Plant Biotechnol. J. 18 721–731. 10.1111/pbi.13239 - DOI - PMC - PubMed
    1. Bhandary P., Seetharam A. S., Arendsee Z. W., Hur M., Wurtele E. S. (2018). Raising orphans from a metadata morass: a researcher’s guide to re-use of public’ omics data. Plant Sci. 267 32–47. 10.1016/j.plantsci.2017.10.014 - DOI - PubMed