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. 2022 Aug 1;7(8):1413-1415.
doi: 10.1080/23802359.2022.2104668. eCollection 2022.

Chloroplast genome of Corydalis impatiens (Pall.) Fisch. ex DC. (Papaveraceae), a Tibetan medical herb

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Chloroplast genome of Corydalis impatiens (Pall.) Fisch. ex DC. (Papaveraceae), a Tibetan medical herb

Digao Wan et al. Mitochondrial DNA B Resour. .

Abstract

Corydalis impatiens (Pall.) Fisch. 1821. (Papaveraceae) is a Tibetan medical herb used to reduce pain, treat skin injuries, cure hepatitis, and benefit the circulatory system. In the current study, the chloroplast genome of C. impatiens was sequenced. This complete genome is a circular 197,317 bp sequence consisting of a small single-copy (SSC, 3105 bp) region, a large single-copy (LSC, 89,790 bp) region, and a pair of inverted repeats (IRs, 52,211 bp). This chloroplast genome encodes a total of 127 functional genes, including 81 protein-coding, 38 transfer RNA, and eight ribosomal RNA genes. Furthermore, this chloroplast genome contains six pseudogenes, including a pair of ndhB a pair of ndhD, one ndhC, and one ndhK. The phylogenetic relationship within the genus Corydalis was inferred with the maximum-likelihood method, and the result showed that C. impatiens was most closely related to C. conspersa.

Keywords: Chloroplast genome; Corydalis impatiens (Pall.) Fisch 1821; Papaveraceae; Tibetan medical herb; evolutionary analysis.

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Conflict of interest statement

No potential conflict of interest was reported by the author(s).

Figures

Figure 1.
Figure 1.
Maximum-likelihood (ML) tree of 16 species based on the complete chloroplast sequences. Numbers above branches are bootstrap percentages (based on 500 replicates).

References

    1. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. . 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. - PMC - PubMed
    1. Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W.. 2011. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics. 27(4):578–579. - PubMed
    1. Katoh K, Standley DM.. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. - PMC - PubMed
    1. Kumar S, Stecher G, Tamura K.. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33(7):1870–1874. - PMC - PubMed
    1. Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE.. 2010. Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proc Natl Acad Sci U S A. 107(10):4623–4628. - PMC - PubMed

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