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Review
. 2022 Nov;119(11):3044-3061.
doi: 10.1002/bit.28206. Epub 2022 Aug 24.

Role, relevance, and possibilities of in vitro fermentation models in human dietary, and gut-microbial studies

Vineet Singh  1 , HyunWoo Son  1 , GyuDae Lee  1 , Sunwoo Lee  2 , Tatsuya Unno  2 , Jae-Ho Shin  1
Affiliations
Review

Role, relevance, and possibilities of in vitro fermentation models in human dietary, and gut-microbial studies

Vineet Singh et al. Biotechnol Bioeng. 2022 Nov.

Abstract

Dietary studies play a crucial role in determining the health-benefiting effects of most food substances, including prebiotics, probiotics, functional foods, and bioactive compounds. Such studies involve gastrointestinal digestion and colonic fermentation of dietary substances. In colonic fermentation, any digested food is further metabolized in the gut by the residing colonic microbiota, causing a shift in the gut microenvironment and production of various metabolites, such as short-chain fatty acids. These diet-induced shifts in the microbial community and metabolite production, which can be assessed through in vitro fermentation models using a donor's fecal microbiota, are well known to impact the health of the host. Although in vivo or animal experiments are the gold standard in dietary studies, recent advancements using different in vitro systems, like artificial colon (ARCOL), mini bioreactor array (MBRA), TNO in vitro model of the colon (TIM), Simulator of the Human Intestinal Microbial Ecosystem (SHIME), M-SHIME, Copenhagen MiniGut, and Dynamic Gastrointestinal Simulator, make it easy to study the dietary impact in terms of the gut microbiota and metabolites. Such a continuous in vitro system can have multiple compartments corresponding to different parts of the colon, that is, proximal, transverse, and distal colon, making the findings physiologically more significant. Furthermore, postfermentation samples can be analyzed using metagenomic, metabolomic, quantitative-polymerase chain reaction, and flow-cytometry approaches. Moreover, studies have shown that in vitro results are in accordance with the in vivo findings, supporting their relevance in dietary studies and giving confidence that shifts in metabolites are only due to microbes. This review meticulously describes the recent advancements in various fermentation models and their relevance in dietary studies.

Keywords: colonic fermentation; fermentation model; gut microbiota; in vitro fecal fermentation; metabolites.

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References

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