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. 2022 Nov 17;11(11):e0068022.
doi: 10.1128/mra.00680-22. Epub 2022 Oct 26.

Complete Coding Sequences of Rhinovirus Types A46, A39, C56, and C48

Courtney L Collins  1 , Temitope O C Faleye  2 , Simona Kraberger  1 , Rafaela S Fontenele  1 , Deborah Adams  3 , Sangeet Adhikari  2   4 , Helen Sandrolini  5 , Sarah Finnerty  5 , Rolf U Halden  2   4 , Matthew Scotch  2   6 , Arvind Varsani  1
Affiliations

Complete Coding Sequences of Rhinovirus Types A46, A39, C56, and C48

Courtney L Collins et al. Microbiol Resour Announc. .

Abstract

We report the coding-complete sequences of rhinovirus types C48, A46, A39, and C56, determined from nasopharyngeal swabs from three individuals with influenza-like symptoms in the United States. One sample showed a coinfection of rhinovirus types A46 and C48.

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Conflict of interest statement

The authors declare a conflict of interest.

Figures

FIG 1
FIG 1
Maximum likelihood phylogeny of the representative sequences of rhinovirus A (A) and rhinovirus C (B), together with the one identified in study, and rooted with sequences of enterovirus D. Genotypes are listed after the accession numbers in square brackets. Branches with posterior aLRT support of <0.8 have been collapsed. (C) Summary of the rhinoviruses identified in this study, including their dates of isolation (day-mo-yr), GenBank accession numbers, read depths (×), and lengths (bp). (D) Pairwise identities of the 11 cleaved protein coding regions within the sequences on the genotypes identified in this study with representatives available in GenBank. Sequence comparison was undertaken using Clinker (10) and nucleotide pairwise identities were calculated using SDT v1.2 (11).
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