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. 2022 Dec 15;11(12):e0093422.
doi: 10.1128/mra.00934-22. Epub 2022 Nov 7.

Complete Genomic Sequences of Two Agarolytic Vibrio Species Isolates from the Red Algae Gracilaria

Affiliations

Complete Genomic Sequences of Two Agarolytic Vibrio Species Isolates from the Red Algae Gracilaria

Mei Ito et al. Microbiol Resour Announc. .

Abstract

We report the complete genomic sequences of two agarolytic Vibrio species strains, STUT-A11 and STUT-A16, isolated from the red algae Gracilaria. Genomic annotations revealed that both strains harbor four β-agarases, α-neoagarooligosaccharide hydrolase, and agarolytic β-galactosidase, which support efficient agarose catabolism.

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Conflict of interest statement

The authors declare no conflict of interest.

References

    1. Jiang C, Liu Z, Cheng D, Mao X. 2020. Agarose degradation for utilization: enzymes, pathways, metabolic engineering methods and products. Biotechnol Adv 45:107641. doi:10.1016/j.biotechadv.2020.107641. - DOI - PubMed
    1. De Coster W, D’Hert S, Schultz DT, Cruts M, Van Broeckhoven C. 2018. NanoPack: visualizing and processing long-read sequencing data. Bioinformatics 34:2666–2669. doi:10.1093/bioinformatics/bty149. - DOI - PMC - PubMed
    1. Chen S, Zhou Y, Chen Y, Gu J. 2018. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34:i884–i890. doi:10.1093/bioinformatics/bty560. - DOI - PMC - PubMed
    1. Wick RR, Judd LM, Gorrie CL, Holt KE. 2017. Unicycler: resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol 13:e1005595. doi:10.1371/journal.pcbi.1005595. - DOI - PMC - PubMed
    1. Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, Earl AM. 2014. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One 9:e112963. doi:10.1371/journal.pone.0112963. - DOI - PMC - PubMed

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