Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2023 Jan;107(1):405-417.
doi: 10.1007/s00253-022-12290-6. Epub 2022 Nov 24.

Effects of different seasons on bacterial community structure in rose rhizosphere soil

Yu-Han Yuan  1   2 , Ling-Xiao Liu  3 , Liang Wang  2 , Gui-Zhi Dong  4 , Yun-Guo Liu  5
Affiliations

Effects of different seasons on bacterial community structure in rose rhizosphere soil

Yu-Han Yuan et al. Appl Microbiol Biotechnol. 2023 Jan.

Abstract

TO explore the changes of rhizosphere soil bacterial community of Rosa rugosa "Fenghua", Rosa rugosa cv. Plena and Rosa rugosa "Zizhi" in different seasons, the Illumina Miseq sequencing and the correlation network analysis of dominant flora was used. The results showed that the bacterial communities were mainly composed of Proteobacteria, Acidobacteria, Bacteroidetes, and Actinobacteria, with Sphingomonas, GP6, GP4, Novosphingobium, Wps-1_genera_incertae_sedis, and Massilia as the dominant genera. The correlation network analysis showed that, as the dominant group with the highest relative abundance, Sphingomonas had a significant positive correlation with Gemmatimonas, Aridibacter, GP3, GP4, and Flavisolibacter, and a significant negative correlation with Solirubrobacter, indicating that it could work synergistically with a variety of microorganisms to contribute to soil metabolism and the growth and development of roses. The results revealed the diversity of microbial structures in the rhizosphere soil of Rosa rugosa "Fenghua", Rosa rugosa cv. Plena and Rosa rugosa "Zizhi", and this will provide a theoretical basis for exploring the change rules of microbial communities, screening and utilizing beneficial microorganisms, and maintaining the growth and development of roses. KEY POINTS: • Variations from season to season significantly affected the bacterial community structure. • There was less variability in the bacterial community structure between rose varieties. • Sphingomonas was the dominant bacterium in all seasons.

Keywords: Illumina Miseq sequencing; Precipitation; Rosa rugosa; Rose rhizosphere soil; Temperature.

PubMed Disclaimer

References

    1. Bai M, Liu J, Fan C, Chen Y, Chen H, Lu J, Sun J, Ning G, Wang C (2021) KSN heterozygosity is associated with continuous flowering of Rosa rugosa purple branch. Hortic Res 8(1):26. https://doi.org/10.1038/s41438-021-00464-8 - DOI
    1. Bhattacharyya C, Imchen M, Mukherjee T, Haldar S, Mondal S, Mukherji S, Haldar A, Kumavath R, Ghosh A (2022) Rhizosphere impacts bacterial community structure in the tea (Camellia sinensis (L.) O. Kuntze.) estates of Darjeeling. India Environmental Microbiol 24(6):2716–2731. https://doi.org/10.1111/1462-2920.15874
    1. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Tumbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335–336. https://doi.org/10.1038/nmeth.f.303 - DOI
    1. Cheng BC, Fu XQ, Guo H, Li T, Wu ZZ, Chan K, Yu ZL (2016) The genus Rosa and arthritis: overview on pharmacological perspectives. Pharmacol Res 114:219–234. https://doi.org/10.1016/j.phrs.2016.10.029 - DOI
    1. Chu J, Liu J, Hoover TR (2020) Phylogenetic distribution, ultrastructure, and function of bacterial flagellar sheaths. Biomolecules 10(3):363. https://doi.org/10.3390/biom10030363 - DOI