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. 2023 Jan 6;51(D1):D18-D28.
doi: 10.1093/nar/gkac1073.

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023

CNCB-NGDC Members and Partners
Collaborators

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023

CNCB-NGDC Members and Partners. Nucleic Acids Res. .

Abstract

The National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB), provides a family of database resources to support global academic and industrial communities. With the explosive accumulation of multi-omics data generated at an unprecedented rate, CNCB-NGDC constantly expands and updates core database resources by big data archive, integrative analysis and value-added curation. In the past year, efforts have been devoted to integrating multiple omics data, synthesizing the growing knowledge, developing new resources and upgrading a set of major resources. Particularly, several database resources are newly developed for infectious diseases and microbiology (MPoxVR, KGCoV, ProPan), cancer-trait association (ASCancer Atlas, TWAS Atlas, Brain Catalog, CCAS) as well as tropical plants (TCOD). Importantly, given the global health threat caused by monkeypox virus and SARS-CoV-2, CNCB-NGDC has newly constructed the monkeypox virus resource, along with frequent updates of SARS-CoV-2 genome sequences, variants as well as haplotypes. All the resources and services are publicly accessible at https://ngdc.cncb.ac.cn.

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Figures

Figure 1.
Figure 1.
Core database resources of CNCB-NGDC classified by database categories. These database resources are publicly available and searchable through the home page of CNCB-NGDC at https://ngdc.cncb.ac.cn. A full list of data resources is shown at https://ngdc.cncb.ac.cn/databases.
Figure 2.
Figure 2.
Statistics of data submissions to CNCB-NGDC. (A) Data statistics of BioProject and BioSample. (B) Data statistics of Experiments and Runs in GSA. (C) Timeline of data growth in GSA. (D) Statistics of genome assemblies in GWH. All statistics are frequently updated and publicly available at https://ngdc.cncb.ac.cn/bioproject, https://ngdc.cncb.ac.cn/biosample, https://ngdc.cncb.ac.cn/gsa and https://ngdc.cncb.ac.cn/gwh.
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