Solvent paramagnetic relaxation enhancement as a versatile method for studying structure and dynamics of biomolecular systems
- PMID: 36496256
- DOI: 10.1016/j.pnmrs.2022.09.001
Solvent paramagnetic relaxation enhancement as a versatile method for studying structure and dynamics of biomolecular systems
Abstract
Solvent paramagnetic relaxation enhancement (sPRE) is a versatile nuclear magnetic resonance (NMR)-based method that allows characterization of the structure and dynamics of biomolecular systems through providing quantitative experimental information on solvent accessibility of NMR-active nuclei. Addition of soluble paramagnetic probes to the solution of a biomolecule leads to paramagnetic relaxation enhancement in a concentration-dependent manner. Here we review recent progress in the sPRE-based characterization of structural and dynamic properties of biomolecules and their complexes, and aim to deliver a comprehensive illustration of a growing number of applications of the method to various biological systems. We discuss the physical principles of sPRE measurements and provide an overview of available co-solute paramagnetic probes. We then explore how sPRE, in combination with complementary biophysical techniques, can further advance biomolecular structure determination, identification of interaction surfaces within protein complexes, and probing of conformational changes and low-population transient states, as well as deliver insights into weak, nonspecific, and transient interactions between proteins and co-solutes. In addition, we present examples of how the incorporation of solvent paramagnetic probes can improve the sensitivity of NMR experiments and discuss the prospects of applying sPRE to NMR metabolomics, drug discovery, and the study of intrinsically disordered proteins.
Keywords: Nuclear magnetic resonance (NMR) spectroscopy; Paramagnetic co-solutes; Solvent accessibility; Solvent paramagnetic relaxation enhancement (sPRE); Structural biology.
Copyright © 2022 The Authors. Published by Elsevier B.V. All rights reserved.
Conflict of interest statement
Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
Similar articles
-
Probing Surfaces in Dynamic Protein Interactions.J Mol Biol. 2020 Apr 17;432(9):2949-2972. doi: 10.1016/j.jmb.2020.02.032. Epub 2020 Mar 2. J Mol Biol. 2020. PMID: 32135192 Review.
-
Conformational Ensemble of Disordered Proteins Probed by Solvent Paramagnetic Relaxation Enhancement (sPRE).Angew Chem Int Ed Engl. 2018 Oct 8;57(41):13519-13522. doi: 10.1002/anie.201807365. Epub 2018 Sep 12. Angew Chem Int Ed Engl. 2018. PMID: 30125451 Free PMC article.
-
NMR characterization of solvent accessibility and transient structure in intrinsically disordered proteins.J Biomol NMR. 2019 Jul;73(6-7):305-317. doi: 10.1007/s10858-019-00248-2. Epub 2019 Jul 11. J Biomol NMR. 2019. PMID: 31297688 Free PMC article.
-
Theory and practice of using solvent paramagnetic relaxation enhancement to characterize protein conformational dynamics.Methods. 2018 Sep 15;148:48-56. doi: 10.1016/j.ymeth.2018.04.006. Epub 2018 Apr 12. Methods. 2018. PMID: 29656079 Free PMC article.
-
Studying the structure and dynamics of biomolecules by using soluble paramagnetic probes.Chemphyschem. 2013 Sep 16;14(13):3082-94. doi: 10.1002/cphc.201300219. Epub 2013 Jul 8. Chemphyschem. 2013. PMID: 23836693 Free PMC article. Review.
Cited by
-
Recent Advances in NMR Protein Structure Prediction with ROSETTA.Int J Mol Sci. 2023 Apr 25;24(9):7835. doi: 10.3390/ijms24097835. Int J Mol Sci. 2023. PMID: 37175539 Free PMC article. Review.
-
Aqueous Photocatalytic Oxidation of Thioethers with Polydiacetylene Micelle Nanoreactors.ChemSusChem. 2025 Feb 1;18(3):e202401395. doi: 10.1002/cssc.202401395. Epub 2024 Nov 1. ChemSusChem. 2025. PMID: 39302255 Free PMC article.
-
The power and pitfalls of AlphaFold2 for structure prediction beyond rigid globular proteins.Nat Chem Biol. 2024 Aug;20(8):950-959. doi: 10.1038/s41589-024-01638-w. Epub 2024 Jun 21. Nat Chem Biol. 2024. PMID: 38907110 Free PMC article. Review.
-
Utilizing Molecular Dynamics Simulations, Machine Learning, Cryo-EM, and NMR Spectroscopy to Predict and Validate Protein Dynamics.Int J Mol Sci. 2024 Sep 8;25(17):9725. doi: 10.3390/ijms25179725. Int J Mol Sci. 2024. PMID: 39273672 Free PMC article. Review.
-
Direct measurements of biomolecular electrostatics through experiments.Curr Opin Struct Biol. 2023 Oct;82:102680. doi: 10.1016/j.sbi.2023.102680. Epub 2023 Aug 11. Curr Opin Struct Biol. 2023. PMID: 37573815 Free PMC article. Review.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources