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. 2023 Feb 16;12(2):e0108122.
doi: 10.1128/mra.01081-22. Epub 2023 Jan 9.

Genome Sequence of a Foot-and-Mouth Disease Virus Detected in Indonesia in 2022

Nuryani Zainuddin  1 , Edy Budi Susila  2 , Hendra Wibawa  3 , Rosmalina Sari Dewi Daulay  2 , Putriani Endah Wijayanti  2 , Dini Fitriani  2 , Dewi Noor Hidayati  2 , Syafrison Idris  1 , Jemma Wadsworth  4 , Noemi Polo  4 , Hayley M Hicks  4 , Valerie Mioulet  4 , Nick J Knowles  4 , Donald P King  4
Affiliations

Genome Sequence of a Foot-and-Mouth Disease Virus Detected in Indonesia in 2022

Nuryani Zainuddin et al. Microbiol Resour Announc. .

Abstract

During 2022, outbreaks of foot-and-mouth disease (FMD) were reported across the islands of Indonesia, a country that had previously maintained an FMD-free (without vaccination) status since 1990. This report describes the near-complete genome sequence of a representative FMD virus collected from these cases belonging to the O/ME-SA/Ind-2001e lineage.

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Conflict of interest statement

The authors declare no conflict of interest.

Figures

FIG 1
FIG 1
Midpoint-rooted maximum likelihood tree of the VP1-coding region. The tree was produced using MEGA7 (4) using a multiple sequence alignment that was built using the ClustalW function within BioEdit (3). The evolutionary history was inferred based on the Tamura 3-parameter model. The rate variation model allowed for some sites to be evolutionarily invariable ([+I]; 65.88% sites). The percentage of trees in which the associated taxa clustered together (by bootstrap analysis) is shown next to the branches (only values of 70% and above are shown). The tree shows representative reference viruses representing lineages and sublineages within the Middle East-South Asia (ME-SA) topotype. The Indonesian sequence reported in this study is indicated by a black diamond.
See this image and copyright information in PMC

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