The structure of an oligo(dA).oligo(dT) tract and its biological implications
- PMID: 3670410
- DOI: 10.1038/330221a0
The structure of an oligo(dA).oligo(dT) tract and its biological implications
Abstract
Poly(dA).poly(dT) has unusual properties in that it cannot associate into nucleosomes and short, phased runs of it cause DNA bending. The crystal structure of a B-type DNA dodecamer containing a homopolymeric run of six A.T base pairs shows that this region possesses special structural features, including a system of bifurcated hydrogen bonds, which explains some of the properties of this simple homopolymer.
Similar articles
-
The propeller DNA conformation of poly(dA).poly(dT).Nucleic Acids Res. 1989 Apr 25;17(8):3229-45. doi: 10.1093/nar/17.8.3229. Nucleic Acids Res. 1989. PMID: 2726457 Free PMC article.
-
Anomalous structure and properties of poly (dA).poly(dT). Computer simulation of the polynucleotide structure with the spine of hydration in the minor groove.Nucleic Acids Res. 1987 Jan 12;15(1):293-311. doi: 10.1093/nar/15.1.293. Nucleic Acids Res. 1987. PMID: 3822805 Free PMC article.
-
One- and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract.Nucleic Acids Res. 1988 Sep 12;16(17):8619-32. doi: 10.1093/nar/16.17.8619. Nucleic Acids Res. 1988. PMID: 3419927 Free PMC article.
-
Poly(dA:dT) tracts: major determinants of nucleosome organization.Curr Opin Struct Biol. 2009 Feb;19(1):65-71. doi: 10.1016/j.sbi.2009.01.004. Epub 2009 Feb 7. Curr Opin Struct Biol. 2009. PMID: 19208466 Free PMC article. Review.
-
Conformational variability of poly(dA-dT).poly(dA-dT) and some other deoxyribonucleic acids includes a novel type of double helix.J Biomol Struct Dyn. 1985 Aug;3(1):67-83. doi: 10.1080/07391102.1985.10508399. J Biomol Struct Dyn. 1985. PMID: 3917211 Review.
Cited by
-
STRs: Ancient Architectures of the Genome beyond the Sequence.J Mol Neurosci. 2021 Dec;71(12):2441-2455. doi: 10.1007/s12031-021-01850-6. Epub 2021 May 30. J Mol Neurosci. 2021. PMID: 34056692 Review.
-
Nuclear scaffold attachment stimulates, but is not essential for ARS activity in Saccharomyces cerevisiae: analysis of the Drosophila ftz SAR.EMBO J. 1990 Dec;9(12):4007-16. doi: 10.1002/j.1460-2075.1990.tb07622.x. EMBO J. 1990. PMID: 2123454 Free PMC article.
-
New insights into Hoogsteen base pairs in DNA duplexes from a structure-based survey.Nucleic Acids Res. 2015 Apr 20;43(7):3420-33. doi: 10.1093/nar/gkv241. Epub 2015 Mar 26. Nucleic Acids Res. 2015. PMID: 25813047 Free PMC article. Review.
-
Chromatin and transcription in yeast.Genetics. 2012 Feb;190(2):351-87. doi: 10.1534/genetics.111.132266. Genetics. 2012. PMID: 22345607 Free PMC article. Review.
-
Unusual conformation of (dA)n.(dT)n-tracts as revealed by cyclobutane thymine-thymine dimer formation.Nucleic Acids Res. 1991 Aug 25;19(16):4491-6. doi: 10.1093/nar/19.16.4491. Nucleic Acids Res. 1991. PMID: 1886772 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources