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. 2023 Feb 24;20(1):35.
doi: 10.1186/s12985-023-01986-4.

Assessment of the clinical and analytical performance of the Aptima SARS-CoV-2 assay using the VALCOR protocol

Sharonjit K Dhillon  1 , Cindy Simoens  1 , Lize Cuypers  2 , Jannes Bode  2 , Jesper Bonde  3 , Philippe Corbisier  4 , Clementina E Cocuzza  5 , Marc Van Ranst  6   7 , Marc Arbyn  8   9
Affiliations

Assessment of the clinical and analytical performance of the Aptima SARS-CoV-2 assay using the VALCOR protocol

Sharonjit K Dhillon et al. Virol J. .

Abstract

Background: The COVID-19 pandemic highlighted the importance of diagnostic testing against curbing the spread of SARS-CoV-2. The urgent need and scale for diagnostic tools resulted in manufacturers of SARS-CoV-2 assays receiving emergency authorization that lacked robust analytical or clinical evaluation. As it is highly likely that testing for SARS-CoV-2 will continue to play a central role in public health, the performance characteristics of assays should be evaluated to ensure reliable diagnostic outcomes are achieved.

Methods: VALCOR or "VALidation of SARS-CORona Virus-2 assays" is a study protocol designed to set up a framework for test validation of SARS-CoV-2 virus assays. Using clinical samples collated from VALCOR, the performance of Aptima SARS-CoV-2 assay was assessed against a standard comparator assay. Diagnostic test parameters such as sensitivity, specificity and overall per cent agreement were calculated for the clinical performance of Aptima SARS-CoV-2 assay.

Results: A total of 180 clinical samples were tested with an addition of 40 diluted clinical specimens to determine the limit of detection. When compared to the standard comparator assay Aptima had a sensitivity of 100.0% [95% CI 95.9-100.0] and specificity of 96.7% [95% CI 90.8-99.3]. The overall percent agreement was 98.3% with an excellent Cohen's coefficient of κ = 0.967 [95% CI 0.929-1.000]. For the limit of detection, Aptima was able to detect all of the diluted clinical samples.

Conclusion: In conclusion. validation of Aptima SARS-CoV-2 assay using clinical samples collated through the VALCOR protocol showed excellent test performance. Additionally, Aptima demonstrated high analytical sensitivity by detecting all diluted clinical samples corresponding to a low limit of detection.

Keywords: Aptima; COVID-19; Diagnostic test accuracy; Quality control; RT-PCR; SARS-CoV-2; Test validation; Transcription mediated amplification; VALCOR.

PubMed Disclaimer

Conflict of interest statement

VALCOR is a researcher induced study protocol where manufacturers can participate under the condition of providing test kits and covering research costs. Researchers do not receive any financial advantage by collaborating in VALCOR. Any mention of commercial products does not imply recommendation or endorsement by the authors.

Figures

Fig. 1
Fig. 1
Overview of samples that were included in the VALCOR panel
See this image and copyright information in PMC

References

    1. Huang C, Wang Y, Li X, et al. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. Lancet. 2020;395(10223):497–506. doi: 10.1016/S0140-6736(20)30183-5. - DOI - PMC - PubMed
    1. Wang C, Horby PW, Hayden FG, Gao GF. A novel coronavirus outbreak of global health concern. The Lancet. 2020;395(10223):470–473. doi: 10.1016/S0140-6736(20)30185-9. - DOI - PMC - PubMed
    1. World Health Organization (WHO). Weekly operational update on COVID-19. https://www.who.int/emergencies/diseases/novel-coronavirus-2019/situatio.... Accessed 03 Aug 2022.
    1. Glenet M, Lebreil A-L, Heng L, N’Guyen Y, Meyer I, Andreoletti L. Asymptomatic COVID-19 adult outpatients identified as significant viable SARS-CoV-2 shedders. Sci Rep. 2021;11(1):20615. doi: 10.1038/s41598-021-00142-8. - DOI - PMC - PubMed
    1. Zhu N, Zhang D, Wang W, et al. A novel coronavirus from patients with pneumonia in China, 2019. N Engl J Med. 2020;382(8):727–733. doi: 10.1056/NEJMoa2001017. - DOI - PMC - PubMed

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