Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2023:2672:549-560.
doi: 10.1007/978-1-0716-3226-0_33.

Online Resources Useful for Plant Cytogenetics and Cytogenomics Research

Affiliations
Review

Online Resources Useful for Plant Cytogenetics and Cytogenomics Research

María Luisa Gutiérrez et al. Methods Mol Biol. 2023.

Abstract

The advancements in research in the field of plant cytogenetics and genomics in recent decades have led to a significant increase in publications. To simplify access to the widely dispersed data, there has been a rise in the number of online databases, repositories, and analytical tools. This chapter presents a comprehensive overview of these resources, which can be beneficial to researchers in these areas. It includes, among others, databases on chromosome numbers, special chromosomes (such as B chromosomes or sex chromosomes), some of which are taxon-specific; genome sizes, cytogenetics; and online applications and tools for genomic analysis and visualization.

Keywords: Chromosome number; Database; Genome size; Genome visualization; Karyotype; Repository.

PubMed Disclaimer

References

    1. Rice A, Glick L, Abadi S et al (2015) The Chromosome Counts Database (CCDB)–a community resource of plant chromosome numbers. New Phytol 206(1):19–26. https://doi.org/10.1111/nph.13191 - DOI - PubMed
    1. Kluyver TA, Osborne CP (2013) Taxonome: a software package for linking biological species data. Ecol Evol 3(5):1262–1265. https://doi.org/10.1002/ece3.529 - DOI - PubMed - PMC
    1. D’Ambrosio U, Alonso-Lifante MP, Barros K et al (2017) B-chrom: a database on B-chromosomes of plants, animals and fungi. New Phytol 216:635–642. https://doi.org/10.1111/nph.14723 - DOI - PubMed
    1. Baránková S, Pascual-Díaz JP, Sultana N et al (2020) Sex-chrom, a database on plant sex chromosomes. New Phytol 227:1594–1604. https://doi.org/10.1111/nph.16635 - DOI - PubMed
    1. Garcia S, Janousek B, Pascual-Díaz JP et al (2023) Sex-chrom v. 2.0: a database of green plant species with sex chromosomes. Chromosoma, 132:55–58. https://doi.org/10.1007/s00412-023-00786-7

Publication types

LinkOut - more resources