Crystallographic characterization of a photoactive yellow protein with photochemistry similar to sensory rhodopsin

Abstract

A photoactive yellow protein purified from the phototrophic bacterium Ectothiorhodospira halophila, has been crystallized by vapor diffusion from ammonium sulfate solution. The hexagonal crystals are in space group P6(3) with unit cell dimensions a = b = 66.89, c = 40.68 A and appear to have one 15,000-dalton protein in the asymmetric unit. Photoactive yellow protein contains a chromophore with retinal-like properties; its color can be reversibly bleached, by visible light, with kinetics similar to those of sensory rhodopsin. The crystals can also be bleached by an intense visible light source without cracking, but are not bleached by x-rays. This suggests that structures can be obtained for both bleached and colored conformations of the protein-bound chromophore. The crystals diffract strongly to at least 1.3 A resolution, are resistant to radiation damage, and are suitable for a high resolution structure determination. The covalently bound chromophore and photobleaching characteristics of the protein offer unique opportunities to study protein conformational change and refolding as well as to understand the mechanisms of light-induced conformational change at atomic resolution.