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. 2023:2703:23-29.
doi: 10.1007/978-1-0716-3389-2_2.

Investigating Pangenome Graphs Using Wheat Panache

Philipp E Bayer  1 , David Edwards  2
Affiliations

Investigating Pangenome Graphs Using Wheat Panache

Philipp E Bayer et al. Methods Mol Biol. 2023.

Abstract

Pangenome graphs quickly become the central data structure representing the diversity of variation we see across related genomes. Pangenome graphs have been published for some species, including plants of agronomic interest. However, visualizing these graphs is not easy as the graphs are large, and variants within these graphs are complex. Tools are needed to visualize graph data structures. Here, we present a workflow to search and visualize a wheat pangenome graph using Wheat Panache. The approach presented assists researchers interested in wheat genomics.

Keywords: Genomics; Graph visualization; Pangenome graph; Website; Wheat panache.

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