A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC

Sybren de Hoog^{1

2

3

4

5

6}, Thomas J Walsh^{6

7

8

9

10

11

12

13

14

15}, Sarah A Ahmed^{1

2

6}, Ana Alastruey-Izquierdo^{6

16

17}, Barbara D Alexander^{10

18}, Maiken Cavling Arendrup^{19

20}, Esther Babady^{10

21}, Feng-Yan Bai^{22

23

24

25

26

27}, Joan-Miquel Balada-Llasat^{10

28}, Andrew Borman²⁹, Anuradha Chowdhary^{17

30}, Andrew Clark^{10

31}, Robert C Colgrove^{32

33}, Oliver A Cornely^{12

17

34

35}, Tanis C Dingle^{10

13

36}, Philippe J Dufresne^{10

13

37}, Jeff Fuller^{10

38}, Jean-Pierre Gangneux^{12

39}, Connie Gibas⁴⁰, Heather Glasgow^{10

41}, Yvonne Gräser⁴², Jacques Guillot^{26

43}, Andreas H Groll^{17

44}, Gerhard Haase⁴⁵, Kimberly Hanson^{10

46}, Amanda Harrington^{10

47}, David L Hawksworth^{48

49

50

51

52

53}, Randall T Hayden^{10

13

41}, Martin Hoenigl^{11

12

54

55

56}, Vit Hubka⁵⁷, Kristie Johnson^{10

58}, Julianne V Kus^{10

59

60}, Ruoyu Li^{3

5

15

17

20

24}, Jacques F Meis^{1

15

34

35}, Michaela Lackner^{6

61}, Fanny Lanternier⁶², Sixto M Leal Jr^{10

11

13

63}, Francesca Lee^{10

31}, Shawn R Lockhart^{10

64}, Paul Luethy^{10

58}, Isabella Martin^{10

65}, Kyung J Kwon-Chung⁶⁶, Wieland Meyer^{9

67}, M Hong Nguyen^{10

11

14

68}, Luis Ostrosky-Zeichner^{11

69}, Elizabeth Palavecino^{10

70}, Preeti Pancholi^{10

28}, Peter G Pappas^{11

63}, Gary W Procop^{10

13

71

72}, Scott A Redhead^{9

73}, Daniel D Rhoads^{74

75

76}, Stefan Riedel^{10

77}, Bryan Stevens^{10

68}, Kaede Ota Sullivan^{10

78}, Paschalis Vergidis^{10

79}, Emmanuel Roilides^{6

12

17

80}, Amir Seyedmousavi^{10

17

26

81}, Lili Tao^{10

82}, Vania A Vicente⁴, Roxana G Vitale^{83

84}, Qi-Ming Wang⁸⁵, Nancy L Wengenack^{10

79}, Lars Westblade^{10

86}, Nathan Wiederhold^{10

11

13

14

40}, Lewis White⁸⁷, Christina M Wojewoda⁸⁸, Sean X Zhang^{6

10

89}

Affiliations

¹ Radboudumc-CWZ Centre of Expertise for Mycology , Nijmegen, the Netherlands.
² Foundation Atlas of Clinical Fungi , Hilversum, the Netherlands.
³ Department of Dermatology and Venereology, Peking University First Hospital , Beijing, China.
⁴ Department of Basic Pathology, Federal University of Paraná , Curitiba, Brazil.
⁵ Research Center for Medical Mycology, Peking University , Beijing, China.
⁶ International Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.
⁷ Center for Innovative Therapeutics and Diagnostics , Richmond, Virginia, USA.
⁸ University of Maryland School of Medicine , Baltimore, Maryland, USA.
⁹ Nomenclature Committee for Fungi, International Mycological Association (IMA).
¹⁰ Fungal Diagnostics Laboratory Consortium (FDLC).
¹¹ Mycoses Study Group, Education and Research Consortium (MSG-ERC).
¹² European Confederation of Medical Mycology (ECMM).
¹³ Clinical and Laboratory Standards Institute (CLSI).
¹⁴ Medical Mycological Society of the Americas (MMSA).
¹⁵ ISHAM Working Group on Diagnostics.
¹⁶ Mycology Reference Laboratory, Spanish National Centre for Microbiology , Madrid, Spain.
¹⁷ Fungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.
¹⁸ Departments of Medicine and Pathology, Duke University , Durham, North Carolina, USA.
¹⁹ Department of Microbiology and Infection Control, Statens Serum Institut, Copenhagen, Denmark; Department of Clinical Microbiology, Copenhagen University Hospital Rigshospitalet , Copenhagen, Denmark.
²⁰ Antifungal Susceptibility Testing Subcommittee of European Committee of Antimicrobial Susceptibility Testing (EUCAST-AFST).
²¹ Clinical Microbiology Service, Department of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center , New York, USA.
²² Mycology Committee of Chinese Society for Microbiology.
²³ Institute of Microbiology, State Key Laboratory of Mycology, Chinese Academy of Sciences , Beijing, China.
²⁴ Medical Mycology Society of Chinese Medicine and Education Association.
²⁵ Asia Pacific Society for Medical Mycology.
²⁶ ISHAM Working Group Veterinary Mycology and One Health.
²⁷ Mycological Society of China (MSC).
²⁸ Clinical Microbiology at The Ohio State University Wexner Medical Center , Columbus, Ohio, USA.
²⁹ National Mycology Reference Laboratory, Public Health England , Bristol, United Kingdom.
³⁰ Department of Microbiology, National Reference Laboratory for Antimicrobial Resistance in Fungal Pathogens, Medical Mycology Unit, Vallabhbhai Patel Chest Institute, University of Delhi , Delhi, India.
³¹ University of Texas Southwestern Medical Center , Dallas, Texas, USA.
³² Division of Infectious Diseases, Mount Auburn Hospital , Cambridge, Massachusetts, USA.
³³ Infectious Diseases Society of America (ISDA).
³⁴ University of Cologne, Faculty of Medicine, Institute of Translational Research, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases , Cologne, Germany.
³⁵ Department I of Internal Medicine, University of Cologne, Excellence Center for Medical Mycology , Cologne, Germany.
³⁶ Alberta Precision Laboratories, Public Health Laboratory , Calgary, Alberta, Canada.
³⁷ Mycology Department, Laboratoire de Santé Publique du Québec, Institut National de Santé Publique du Québec (INSPQ), Sainte-Anne-de-Bellevue , Québec, Canada.
³⁸ Department of Pathology and Laboratory Medicine, London Health Sciences Center , London, Ontario, Canada.
³⁹ Department of Mycology, Centre Hospitalier Universitaire de Rennes , Rennes, France.
⁴⁰ University of Texas Health Science Center , San Antonio, Texas, USA.
⁴¹ Clinical and Molecular Microbiology, Department of Pathology, St. Jude Children's Research Hospital , Memphis, Tennessee, USA.
⁴² Department of Parasitology (Charité), Institute of Microbiology and Hygiene, Humboldt University , Berlin, Germany.
⁴³ Onoris, École Nationale Vétérinaire, Agroalimentaire et de l'Alimentation Nantes-Atlantique , Nantes, France.
⁴⁴ Infectious Disease Research Program, Department of Pediatric Hematology and Oncology and Center for Bone Marrow Transplantation, University Children's Hospital , Münster, Germany.
⁴⁵ Laboratory Diagnostic Center, RWTH Aachen University Hospital , Aachen, Germany.
⁴⁶ University of Utah School of Medicine , Salt Lake City, Utah, USA.
⁴⁷ Loyola University Health System, Loyola University Chicago , Maywood, Illinois, USA.
⁴⁸ Royal Botanic Gardens, Kew , Richmond, Surrey, United Kingdom.
⁴⁹ Natural History Museum , London, United Kingdom.
⁵⁰ University of Southampton , Southampton, United Kingdom.
⁵¹ Jilin Agricultural University , Chanchung, China.
⁵² General Committee for Nomenclature, International Botanical Congress (IBC).
⁵³ Advisory Board of International Commission on the Taxonomy of Fungi (ICTF).
⁵⁴ Division of Infectious Diseases, Medical University of Graz , Graz, Austria.
⁵⁵ Translational Medical Mycology Research Unit, ECMM Excellence Center for Medical Mycology, Medical University of Graz , Graz, Austria.
⁵⁶ European Hematology Association, Specialized Working Group for Infections in Hematology , The Hague, the Netherlands.
⁵⁷ Department of Botany, Charles University , Prague, Czechia.
⁵⁸ Clinical Microbiology Laboratory, UMMC Laboratories of Pathology, University of Maryland School of Medicine , Baltimore, Maryland, USA.
⁵⁹ Public Health Ontario , Toronto, Ontario, Canada.
⁶⁰ Department of Laboratory Medicine and Pathobiology, Canada and University of Toronto , Toronto, Ontario, Canada.
⁶¹ Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck , Innsbruck, Austria.
⁶² Institut Pasteur , Paris, France.
⁶³ University of Alabama at Birmingham , Birmingham, Alabama, USA.
⁶⁴ Centers for Disease Control and Prevention , Atlanta, Georgia, USA.
⁶⁵ Dartmouth Health , Lebanon, New Hampshire, USA.
⁶⁶ National Institute of Allergy and Infectious Diseases, National Institutes of Health , Bethesda, Maryland, USA.
⁶⁷ Westerdijk Fungal Biodiversity Institute , Utrecht, The Netherlands.
⁶⁸ University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA.
⁶⁹ University of Texas Health Science Center at Houston , Houston, Texas, USA.
⁷⁰ Clinical Microbiology Laboratory, Wake Forest Baptist Medical Center , Winston-Salem, North Carolina, USA.
⁷¹ The American Board of Pathology , Tampa, Florida, USA.
⁷² American Board of Pathology (ABP).
⁷³ National Mycological Herbarium, Ottawa Research and Development Centre, Science and Technology Branch, Agriculture & Agri-Food Canada , Ottawa, Ontario, Canada.
⁷⁴ Cleveland Clinic Lerner College of Medicine, Case Western Reserve University , Cleveland, Ohio, USA.
⁷⁵ Department of Laboratory Medicine, Cleveland Clinic , Cleveland, Ohio, USA.
⁷⁶ Infection Biology Program, Lerner Research Institute, Cleveland Clinic , Cleveland, Ohio, USA.
⁷⁷ Beth Israel Deaconess Medical Center , Boston, Massachusetts, USA.
⁷⁸ Lewis Katz School of Medicine, Temple University , Philadelphia, Pennsylvania, USA.
⁷⁹ Mayo Clinic , Rochester, Minnesota, USA.
⁸⁰ Hippokration Hospital , Thessaloniki, Greece.
⁸¹ Microbiology Service, Department of Laboratory Medicine, Clinical Center, National Institutes of Health , Bethesda, Maryland, USA.
⁸² Vanderbilt University Medical Center , Nashville, Tennessee, USA.
⁸³ Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET) , Buenos Aires, Argentina.
⁸⁴ Unidad de Parasitología, Sector Micología, Hospital J.M. Ramos Mejía , Buenos Aires, Argentina.
⁸⁵ Engineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University , Baoding, China.
⁸⁶ Department of Pathology and Laboratory Medicine, Weill Cornell Medical College , New York, USA.
⁸⁷ Public Health Wales Microbiology , Cardiff, United Kingdom.
⁸⁸ Department of Pathology and Laboratory Medicine, University of Vermont Medical Center , Burlington, Vermont, USA.
⁸⁹ Johns Hopkins University School of Medicine , Baltimore, Maryland, USA.

PMID: 37882528
PMCID: PMC10662369
DOI: 10.1128/jcm.00873-23

A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC

Sybren de Hoog et al. J Clin Microbiol. 2023.

. 2023 Nov 21;61(11):e0087323.

doi: 10.1128/jcm.00873-23. Epub 2023 Oct 26.

Authors

Affiliations

¹ Radboudumc-CWZ Centre of Expertise for Mycology , Nijmegen, the Netherlands.
² Foundation Atlas of Clinical Fungi , Hilversum, the Netherlands.
³ Department of Dermatology and Venereology, Peking University First Hospital , Beijing, China.
⁴ Department of Basic Pathology, Federal University of Paraná , Curitiba, Brazil.
⁵ Research Center for Medical Mycology, Peking University , Beijing, China.
⁶ International Society for Human and Animal Mycology (ISHAM), Working Group Nomenclature.
⁷ Center for Innovative Therapeutics and Diagnostics , Richmond, Virginia, USA.
⁸ University of Maryland School of Medicine , Baltimore, Maryland, USA.
⁹ Nomenclature Committee for Fungi, International Mycological Association (IMA).
¹⁰ Fungal Diagnostics Laboratory Consortium (FDLC).
¹¹ Mycoses Study Group, Education and Research Consortium (MSG-ERC).
¹² European Confederation of Medical Mycology (ECMM).
¹³ Clinical and Laboratory Standards Institute (CLSI).
¹⁴ Medical Mycological Society of the Americas (MMSA).
¹⁵ ISHAM Working Group on Diagnostics.
¹⁶ Mycology Reference Laboratory, Spanish National Centre for Microbiology , Madrid, Spain.
¹⁷ Fungal Infection Study Group, European Society of Clinical Microbiology and Infectious Diseases (EFISG/ESCMID) , Basel, Switzerland.
¹⁸ Departments of Medicine and Pathology, Duke University , Durham, North Carolina, USA.
¹⁹ Department of Microbiology and Infection Control, Statens Serum Institut, Copenhagen, Denmark; Department of Clinical Microbiology, Copenhagen University Hospital Rigshospitalet , Copenhagen, Denmark.
²⁰ Antifungal Susceptibility Testing Subcommittee of European Committee of Antimicrobial Susceptibility Testing (EUCAST-AFST).
²¹ Clinical Microbiology Service, Department of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center , New York, USA.
²² Mycology Committee of Chinese Society for Microbiology.
²³ Institute of Microbiology, State Key Laboratory of Mycology, Chinese Academy of Sciences , Beijing, China.
²⁴ Medical Mycology Society of Chinese Medicine and Education Association.
²⁵ Asia Pacific Society for Medical Mycology.
²⁶ ISHAM Working Group Veterinary Mycology and One Health.
²⁷ Mycological Society of China (MSC).
²⁸ Clinical Microbiology at The Ohio State University Wexner Medical Center , Columbus, Ohio, USA.
²⁹ National Mycology Reference Laboratory, Public Health England , Bristol, United Kingdom.
³⁰ Department of Microbiology, National Reference Laboratory for Antimicrobial Resistance in Fungal Pathogens, Medical Mycology Unit, Vallabhbhai Patel Chest Institute, University of Delhi , Delhi, India.
³¹ University of Texas Southwestern Medical Center , Dallas, Texas, USA.
³² Division of Infectious Diseases, Mount Auburn Hospital , Cambridge, Massachusetts, USA.
³³ Infectious Diseases Society of America (ISDA).
³⁴ University of Cologne, Faculty of Medicine, Institute of Translational Research, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases , Cologne, Germany.
³⁵ Department I of Internal Medicine, University of Cologne, Excellence Center for Medical Mycology , Cologne, Germany.
³⁶ Alberta Precision Laboratories, Public Health Laboratory , Calgary, Alberta, Canada.
³⁷ Mycology Department, Laboratoire de Santé Publique du Québec, Institut National de Santé Publique du Québec (INSPQ), Sainte-Anne-de-Bellevue , Québec, Canada.
³⁸ Department of Pathology and Laboratory Medicine, London Health Sciences Center , London, Ontario, Canada.
³⁹ Department of Mycology, Centre Hospitalier Universitaire de Rennes , Rennes, France.
⁴⁰ University of Texas Health Science Center , San Antonio, Texas, USA.
⁴¹ Clinical and Molecular Microbiology, Department of Pathology, St. Jude Children's Research Hospital , Memphis, Tennessee, USA.
⁴² Department of Parasitology (Charité), Institute of Microbiology and Hygiene, Humboldt University , Berlin, Germany.
⁴³ Onoris, École Nationale Vétérinaire, Agroalimentaire et de l'Alimentation Nantes-Atlantique , Nantes, France.
⁴⁴ Infectious Disease Research Program, Department of Pediatric Hematology and Oncology and Center for Bone Marrow Transplantation, University Children's Hospital , Münster, Germany.
⁴⁵ Laboratory Diagnostic Center, RWTH Aachen University Hospital , Aachen, Germany.
⁴⁶ University of Utah School of Medicine , Salt Lake City, Utah, USA.
⁴⁷ Loyola University Health System, Loyola University Chicago , Maywood, Illinois, USA.
⁴⁸ Royal Botanic Gardens, Kew , Richmond, Surrey, United Kingdom.
⁴⁹ Natural History Museum , London, United Kingdom.
⁵⁰ University of Southampton , Southampton, United Kingdom.
⁵¹ Jilin Agricultural University , Chanchung, China.
⁵² General Committee for Nomenclature, International Botanical Congress (IBC).
⁵³ Advisory Board of International Commission on the Taxonomy of Fungi (ICTF).
⁵⁴ Division of Infectious Diseases, Medical University of Graz , Graz, Austria.
⁵⁵ Translational Medical Mycology Research Unit, ECMM Excellence Center for Medical Mycology, Medical University of Graz , Graz, Austria.
⁵⁶ European Hematology Association, Specialized Working Group for Infections in Hematology , The Hague, the Netherlands.
⁵⁷ Department of Botany, Charles University , Prague, Czechia.
⁵⁸ Clinical Microbiology Laboratory, UMMC Laboratories of Pathology, University of Maryland School of Medicine , Baltimore, Maryland, USA.
⁵⁹ Public Health Ontario , Toronto, Ontario, Canada.
⁶⁰ Department of Laboratory Medicine and Pathobiology, Canada and University of Toronto , Toronto, Ontario, Canada.
⁶¹ Institute of Hygiene and Medical Microbiology, Medical University of Innsbruck , Innsbruck, Austria.
⁶² Institut Pasteur , Paris, France.
⁶³ University of Alabama at Birmingham , Birmingham, Alabama, USA.
⁶⁴ Centers for Disease Control and Prevention , Atlanta, Georgia, USA.
⁶⁵ Dartmouth Health , Lebanon, New Hampshire, USA.
⁶⁶ National Institute of Allergy and Infectious Diseases, National Institutes of Health , Bethesda, Maryland, USA.
⁶⁷ Westerdijk Fungal Biodiversity Institute , Utrecht, The Netherlands.
⁶⁸ University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA.
⁶⁹ University of Texas Health Science Center at Houston , Houston, Texas, USA.
⁷⁰ Clinical Microbiology Laboratory, Wake Forest Baptist Medical Center , Winston-Salem, North Carolina, USA.
⁷¹ The American Board of Pathology , Tampa, Florida, USA.
⁷² American Board of Pathology (ABP).
⁷³ National Mycological Herbarium, Ottawa Research and Development Centre, Science and Technology Branch, Agriculture & Agri-Food Canada , Ottawa, Ontario, Canada.
⁷⁴ Cleveland Clinic Lerner College of Medicine, Case Western Reserve University , Cleveland, Ohio, USA.
⁷⁵ Department of Laboratory Medicine, Cleveland Clinic , Cleveland, Ohio, USA.
⁷⁶ Infection Biology Program, Lerner Research Institute, Cleveland Clinic , Cleveland, Ohio, USA.
⁷⁷ Beth Israel Deaconess Medical Center , Boston, Massachusetts, USA.
⁷⁸ Lewis Katz School of Medicine, Temple University , Philadelphia, Pennsylvania, USA.
⁷⁹ Mayo Clinic , Rochester, Minnesota, USA.
⁸⁰ Hippokration Hospital , Thessaloniki, Greece.
⁸¹ Microbiology Service, Department of Laboratory Medicine, Clinical Center, National Institutes of Health , Bethesda, Maryland, USA.
⁸² Vanderbilt University Medical Center , Nashville, Tennessee, USA.
⁸³ Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET) , Buenos Aires, Argentina.
⁸⁴ Unidad de Parasitología, Sector Micología, Hospital J.M. Ramos Mejía , Buenos Aires, Argentina.
⁸⁵ Engineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University , Baoding, China.
⁸⁶ Department of Pathology and Laboratory Medicine, Weill Cornell Medical College , New York, USA.
⁸⁷ Public Health Wales Microbiology , Cardiff, United Kingdom.
⁸⁸ Department of Pathology and Laboratory Medicine, University of Vermont Medical Center , Burlington, Vermont, USA.
⁸⁹ Johns Hopkins University School of Medicine , Baltimore, Maryland, USA.

PMID: 37882528
PMCID: PMC10662369
DOI: 10.1128/jcm.00873-23

Abstract

The rapid pace of name changes of medically important fungi is creating challenges for clinical laboratories and clinicians involved in patient care. We describe two sources of name change which have different drivers, at the species versus the genus level. Some suggestions are made here to reduce the number of name changes. We urge taxonomists to provide diagnostic markers of taxonomic novelties. Given the instability of phylogenetic trees due to variable taxon sampling, we advocate to maintain genera at the largest possible size. Reporting of identified species in complexes or series should where possible comprise both the name of the overarching species and that of the molecular sibling, often cryptic species. Because the use of different names for the same species will be unavoidable for many years to come, an open access online database of the names of all medically important fungi, with proper nomenclatural designation and synonymy, is essential. We further recommend that while taxonomic discovery continues, the adaptation of new name changes by clinical laboratories and clinicians be reviewed routinely by a standing committee for validation and stability over time, with reference to an open access database, wherein reasons for changes are listed in a transparent way.

Keywords: fungi; nomenclature; taxonomy.

PubMed Disclaimer

Conflict of interest statement

The authors declare no conflict of interest.

Comment in

Inconsistencies within the proposed framework for stabilizing fungal nomenclature risk further confusion.
Kidd SE, Hagen F, Halliday CL, Abdolrasouli A, Boekhout T, Crous PW, Ellis DH, Elvy J, Forrest GN, Groenewald M, Hahn RC, Houbraken J, Rodrigues AM, Scott J, Sorrell TC, Summerbell RC, Tsui CKM, Yurkov A, Chen SC-A. Kidd SE, et al. J Clin Microbiol. 2024 Apr 10;62(4):e0157023. doi: 10.1128/jcm.01570-23. Epub 2024 Mar 5. J Clin Microbiol. 2024. PMID: 38441055 Free PMC article. No abstract available.

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A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC

Affiliations

A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC

Authors

Affiliations

Abstract

Conflict of interest statement

Comment in

References

Publication types

MeSH terms

LinkOut - more resources

Full Text Sources

Medical