Author Correction: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

Jennifer R S Meadows^#¹, Jefrey M Kidd^#², Guo-Dong Wang³, Heidi G Parker⁴, Peter Z Schall⁵, Matteo Bianchi⁶, Matthew J Christmas⁶, Katia Bougiouri⁷, Reuben M Buckley⁴, Christophe Hitte⁸, Anthony K Nguyen⁵, Chao Wang⁶, Vidhya Jagannathan⁹, Julia E Niskanen¹⁰, Laurent A F Frantz¹¹, Meharji Arumilli¹⁰, Sruthi Hundi¹⁰, Kerstin Lindblad-Toh^{6

12}, Catarina Ginja¹³, Kadek Karang Agustina¹⁴, Catherine André⁸, Adam R Boyko¹⁵, Brian W Davis¹⁶, Michaela Drögemüller⁹, Xin-Yao Feng³, Konstantinos Gkagkavouzis¹⁷, Giorgos Iliopoulos¹⁸, Alexander C Harris⁴, Marjo K Hytönen¹⁰, Daniela C Kalthof¹⁸, Yan-Hu Liu³, Petros Lymberakis^{19

20

21}, Nikolaos Poulakakis^{19

20

21}, Ana Elisabete Pires¹³, Fernando Racimo⁷, Fabian Ramos-Almodovar⁵, Peter Savolainen²², Semina Venetsani²³, Imke Tammen²⁴, Alexandros Triantafyllidis¹⁷, Bridgett vonHoldt²⁵, Robert K Wayne²⁶, Greger Larson²⁷, Frank W Nicholas²⁴, Hannes Lohi¹⁰, Tosso Leeb⁹, Ya-Ping Zhang^#³, Elaine A Ostrander^#²⁸

Affiliations

¹ Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, 75132, Uppsala, Sweden. jennifer.meadows@imbim.uu.se.
² Department of Human Genetics, University of Michigan, Ann Arbor, MI, 48107, USA. jmkidd@umich.edu.
³ State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China.
⁴ National Human Genome Research Institute, National Institutes of Health, 50 South Drive, Building 50 Room 5351, Bethesda, MD, 20892, USA.
⁵ Department of Human Genetics, University of Michigan, Ann Arbor, MI, 48107, USA.
⁶ Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, 75132, Uppsala, Sweden.
⁷ Section for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen, Denmark.
⁸ University of Rennes, CNRS, Institute Genetics and Development Rennes - UMR6290, 35000, Rennes, France.
⁹ Institute of Genetics, Vetsuisse Faculty, University of Bern, 3001, Bern, Switzerland.
¹⁰ Department of Medical and Clinical Genetics, Department of Veterinary Biosciences, University of Helsinki and Folkhälsan Research Center, 02900, Helsinki, Finland.
¹¹ School of Biological and Behavioural Sciences, Queen Mary University of London, London, E14NS, UK and Palaeogenomics Group, Department of Veterinary Sciences, Ludwig Maximilian University, D-80539, Munich, Germany.
¹² Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
¹³ BIOPOLIS-CIBIO-InBIO-Centro de Investigação Em Biodiversidade E Recursos Genéticos - ArchGen Group, Universidade Do Porto, 4485-661, Vairão, Portugal.
¹⁴ Department of Public Health, Udayana University, Bali, 80361, Indonesia.
¹⁵ Department of Biomedical Sciences, Cornell University, 930 Campus Road, Ithaca, NY, 14853, USA.
¹⁶ Department of Veterinary Integrative Biosciences, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, 77843, USA.
¹⁷ Department of Genetics, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Macedonia 54124, Greece and Genomics and Epigenomics Translational Research (GENeTres), Center for Interdisciplinary Research and Innovation (CIRI-AUTH, Balkan Center, Thessaloniki, Greece.
¹⁸ NGO "Callisto", Wildlife and Nature Conservation Society, 54621, Thessaloniki, Greece.
¹⁹ Natural History Museum of Crete & Department of Biology, University of Crete, 71202, Irakleio, Greece.
²⁰ Biology Department, School of Sciences and Engineering, University of Crete, Heraklion, Greece.
²¹ Palaeogenomics and Evolutionary Genetics Lab, Institute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology - Hellas (FORTH), Heraklion, Greece.
²² Department of Gene Technology, Science for Life Laboratory, KTH - Royal Institute of Technology, 17121, Solna, Sweden.
²³ Department of Genetics, School of Biology, Aristotle University of Thessaloniki, 54124, Thessaloniki, Macedonia, Greece.
²⁴ Sydney School of Veterinary Science, The University of Sydney, Sydney, NSW, 2570, Australia.
²⁵ Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, 08544, USA.
²⁶ Department of Ecology and Evolutionary Biology, Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 90095-7246, USA.
²⁷ Palaeogenomics and Bio-Archaeology Research Network, School of Archaeology, University of Oxford, Oxford, OX1 3TG, UK.
²⁸ National Human Genome Research Institute, National Institutes of Health, 50 South Drive, Building 50 Room 5351, Bethesda, MD, 20892, USA. eostrand@mail.nih.gov.

^# Contributed equally.

PMID: 37936157
PMCID: PMC10631033
DOI: 10.1186/s13059-023-03101-w

Published Erratum

Author Correction: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

Jennifer R S Meadows et al. Genome Biol. 2023.

. 2023 Nov 7;24(1):255.

doi: 10.1186/s13059-023-03101-w.

Authors

Affiliations

¹ Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, 75132, Uppsala, Sweden. jennifer.meadows@imbim.uu.se.
² Department of Human Genetics, University of Michigan, Ann Arbor, MI, 48107, USA. jmkidd@umich.edu.
³ State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China.
⁴ National Human Genome Research Institute, National Institutes of Health, 50 South Drive, Building 50 Room 5351, Bethesda, MD, 20892, USA.
⁵ Department of Human Genetics, University of Michigan, Ann Arbor, MI, 48107, USA.
⁶ Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, 75132, Uppsala, Sweden.
⁷ Section for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen, Denmark.
⁸ University of Rennes, CNRS, Institute Genetics and Development Rennes - UMR6290, 35000, Rennes, France.
⁹ Institute of Genetics, Vetsuisse Faculty, University of Bern, 3001, Bern, Switzerland.
¹⁰ Department of Medical and Clinical Genetics, Department of Veterinary Biosciences, University of Helsinki and Folkhälsan Research Center, 02900, Helsinki, Finland.
¹¹ School of Biological and Behavioural Sciences, Queen Mary University of London, London, E14NS, UK and Palaeogenomics Group, Department of Veterinary Sciences, Ludwig Maximilian University, D-80539, Munich, Germany.
¹² Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
¹³ BIOPOLIS-CIBIO-InBIO-Centro de Investigação Em Biodiversidade E Recursos Genéticos - ArchGen Group, Universidade Do Porto, 4485-661, Vairão, Portugal.
¹⁴ Department of Public Health, Udayana University, Bali, 80361, Indonesia.
¹⁵ Department of Biomedical Sciences, Cornell University, 930 Campus Road, Ithaca, NY, 14853, USA.
¹⁶ Department of Veterinary Integrative Biosciences, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, 77843, USA.
¹⁷ Department of Genetics, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Macedonia 54124, Greece and Genomics and Epigenomics Translational Research (GENeTres), Center for Interdisciplinary Research and Innovation (CIRI-AUTH, Balkan Center, Thessaloniki, Greece.
¹⁸ NGO "Callisto", Wildlife and Nature Conservation Society, 54621, Thessaloniki, Greece.
¹⁹ Natural History Museum of Crete & Department of Biology, University of Crete, 71202, Irakleio, Greece.
²⁰ Biology Department, School of Sciences and Engineering, University of Crete, Heraklion, Greece.
²¹ Palaeogenomics and Evolutionary Genetics Lab, Institute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology - Hellas (FORTH), Heraklion, Greece.
²² Department of Gene Technology, Science for Life Laboratory, KTH - Royal Institute of Technology, 17121, Solna, Sweden.
²³ Department of Genetics, School of Biology, Aristotle University of Thessaloniki, 54124, Thessaloniki, Macedonia, Greece.
²⁴ Sydney School of Veterinary Science, The University of Sydney, Sydney, NSW, 2570, Australia.
²⁵ Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, 08544, USA.
²⁶ Department of Ecology and Evolutionary Biology, Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 90095-7246, USA.
²⁷ Palaeogenomics and Bio-Archaeology Research Network, School of Archaeology, University of Oxford, Oxford, OX1 3TG, UK.
²⁸ National Human Genome Research Institute, National Institutes of Health, 50 South Drive, Building 50 Room 5351, Bethesda, MD, 20892, USA. eostrand@mail.nih.gov.

^# Contributed equally.

PMID: 37936157
PMCID: PMC10631033
DOI: 10.1186/s13059-023-03101-w

No abstract available

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Figures

**Fig. 5**
Genotype imputation accuracy of the Dog10K reference panel. a NRC rates of imputed genotypes across autosomes and the PAR segment of chromosome X. Variant sites are filtered according to GLIMPSE and IMPUTE5 imputation quality scores (INFO > 0.9). b NRC rates of imputed genotypes across the non-PAR segment of chromosome X. Variants are not filtered by imputation quality score, as imputation software does not provide scores for haploid genotypes. c NRC rates of imputed genotypes across autosomes and the PAR segment of chromosome X prior to filtering on imputation quality. d NRC rates and total number of imputed sites for each platform. Sites were filtered according to imputation quality score > 0.9 and reference MAF > 1%. e NRC rates for downsampled and full chromosome 38 reference panels for sites with reference MAF > 1%. Results show both quality and non-quality filtered sites. Data points show NRC rates for a single downsampled reference panel. Horizontal bars indicate mean NRC rates for each reference panel population size. f Number of imputed variants for downsampled and full chromosome 38 reference panels for sites with reference MAF > 1%. Results show both quality and non-quality filtered sites. Data points show the number of imputed variants for a single downsampled reference panel. Horizontal bars indicate the mean number of variants for each reference panel population size

See this image and copyright information in PMC

Erratum for

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture.
Meadows JRS, Kidd JM, Wang GD, Parker HG, Schall PZ, Bianchi M, Christmas MJ, Bougiouri K, Buckley RM, Hitte C, Nguyen AK, Wang C, Jagannathan V, Niskanen JE, Frantz LAF, Arumilli M, Hundi S, Lindblad-Toh K, Ginja C, Agustina KK, André C, Boyko AR, Davis BW, Drögemüller M, Feng XY, Gkagkavouzis K, Iliopoulos G, Harris AC, Hytönen MK, Kalthoff DC, Liu YH, Lymberakis P, Poulakakis N, Pires AE, Racimo F, Ramos-Almodovar F, Savolainen P, Venetsani S, Tammen I, Triantafyllidis A, vonHoldt B, Wayne RK, Larson G, Nicholas FW, Lohi H, Leeb T, Zhang YP, Ostrander EA. Meadows JRS, et al. Genome Biol. 2023 Aug 15;24(1):187. doi: 10.1186/s13059-023-03023-7. Genome Biol. 2023. PMID: 37582787 Free PMC article.

References

1. Meadows JRS, Kidd JM, Wang GD, et al. Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture. Genome Biol. 2023;24:187. doi: 10.1186/s13059-023-03023-7. - DOI - PMC - PubMed

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Author Correction: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

Affiliations

Author Correction: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

Authors

Affiliations

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Erratum for

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