Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies
- PMID: 38217166
- DOI: 10.1038/s43588-020-00007-6
Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies
Abstract
Responding quickly to unknown pathogens is crucial to stop uncontrolled spread of diseases that lead to epidemics, such as the novel coronavirus, and to keep protective measures at a level that causes as little social and economic harm as possible. This can be achieved through computational approaches that significantly speed up drug discovery. A powerful approach is to restrict the search to existing drugs through drug repurposing, which can vastly accelerate the usually long approval process. In this Review, we examine a representative set of currently used computational approaches to identify repurposable drugs for COVID-19, as well as their underlying data resources. Furthermore, we compare drug candidates predicted by computational methods to drugs being assessed by clinical trials. Finally, we discuss lessons learned from the reviewed research efforts, including how to successfully connect computational approaches with experimental studies, and propose a unified drug repurposing strategy for better preparedness in the case of future outbreaks.
© 2021. Springer Nature America, Inc.
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References
-
- Pushpakom, S. et al. Drug repurposing: progress, challenges and recommendations. Nat. Rev. Drug Discov. 18, 41–58 (2019). - DOI
-
- Paranjpe, M. D., Taubes, A. & Sirota, M. Insights into computational drug repurposing for neurodegenerative disease. Trends Pharmacol. Sci. 40, 565–576 (2019). - DOI
-
- Sanseau, P. & Koehler, J. Computational methods for drug repurposing. Brief. Bioinform. 12, 301–302 (2011). - DOI
-
- Ciliberto, G. & Cardone, L. Boosting the arsenal against COVID-19 through computational drug repurposing. Drug Discov. Today 25, 946–948 (2020). - DOI
-
- Benson, D. A. et al. GenBank. Nucleic Acids Res. 41, D36–D42 (2013). - DOI
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