DNA as a universal chemical substrate for computing and data storage
- PMID: 38337008
- DOI: 10.1038/s41570-024-00576-4
DNA as a universal chemical substrate for computing and data storage
Abstract
DNA computing and DNA data storage are emerging fields that are unlocking new possibilities in information technology and diagnostics. These approaches use DNA molecules as a computing substrate or a storage medium, offering nanoscale compactness and operation in unconventional media (including aqueous solutions, water-in-oil microemulsions and self-assembled membranized compartments) for applications beyond traditional silicon-based computing systems. To build a functional DNA computer that can process and store molecular information necessitates the continued development of strategies for computing and data storage, as well as bridging the gap between these fields. In this Review, we explore how DNA can be leveraged in the context of DNA computing with a focus on neural networks and compartmentalized DNA circuits. We also discuss emerging approaches to the storage of data in DNA and associated topics such as the writing, reading, retrieval and post-synthesis editing of DNA-encoded data. Finally, we provide insights into how DNA computing can be integrated with DNA data storage and explore the use of DNA for near-memory computing for future information technology and health analysis applications.
© 2024. Springer Nature Limited.
Similar articles
-
Nucleic Acid Databases and Molecular-Scale Computing.ACS Nano. 2019 Jun 25;13(6):6256-6268. doi: 10.1021/acsnano.9b02562. Epub 2019 May 24. ACS Nano. 2019. PMID: 31117381 Review.
-
Empowering DNA-Based Information Processing: Computation and Data Storage.ACS Appl Mater Interfaces. 2024 Dec 18;16(50):68749-68771. doi: 10.1021/acsami.4c13948. Epub 2024 Dec 8. ACS Appl Mater Interfaces. 2024. PMID: 39648356 Review.
-
Rewireable Building Blocks for Enzyme-Powered DNA Computing Networks.J Am Chem Soc. 2024 Sep 25;146(38):26148-26160. doi: 10.1021/jacs.4c07221. Epub 2024 Sep 10. J Am Chem Soc. 2024. PMID: 39255470
-
A novel activation function based on DNA enzyme-free hybridization reaction and its implementation on nonlinear molecular learning systems.Phys Chem Chem Phys. 2024 Apr 17;26(15):11854-11866. doi: 10.1039/d3cp02811a. Phys Chem Chem Phys. 2024. PMID: 38567416
-
The art of molecular computing: Whence and whither.Bioessays. 2021 Aug;43(8):e2100051. doi: 10.1002/bies.202100051. Epub 2021 Jun 8. Bioessays. 2021. PMID: 34101866 Review.
Cited by
-
Polymerase-based DNA reactions for molecularly computing cancerous diagnostic valences of multiple miRNAs.J Nanobiotechnology. 2025 Sep 1;23(1):598. doi: 10.1186/s12951-025-03643-0. J Nanobiotechnology. 2025. PMID: 40890787
-
Covalent Dynamic DNA Networks to Translate Multiple Inputs into Programmable Outputs.J Am Chem Soc. 2025 Feb 19;147(7):5755-5763. doi: 10.1021/jacs.4c13854. Epub 2025 Feb 5. J Am Chem Soc. 2025. PMID: 39905964 Free PMC article.
-
DNA-DISK: Automated end-to-end data storage via enzymatic single-nucleotide DNA synthesis and sequencing on digital microfluidics.Proc Natl Acad Sci U S A. 2024 Aug 20;121(34):e2410164121. doi: 10.1073/pnas.2410164121. Epub 2024 Aug 15. Proc Natl Acad Sci U S A. 2024. PMID: 39145927 Free PMC article.
-
Levy Sooty Tern Optimization Algorithm Builds DNA Storage Coding Sets for Random Access.Entropy (Basel). 2024 Sep 11;26(9):778. doi: 10.3390/e26090778. Entropy (Basel). 2024. PMID: 39330111 Free PMC article.
-
A Programmed DNA Dynamic Assembly-Guided Molecular Amplifier for Authentic Information Decryption.Adv Sci (Weinh). 2025 Jun;12(22):e2409586. doi: 10.1002/advs.202409586. Epub 2025 May 19. Adv Sci (Weinh). 2025. PMID: 40387287 Free PMC article.
References
-
- Rampioni, G. et al. A synthetic biology approach to bio-chem-ICT: first moves towards chemical communication between synthetic and natural cells. Nat. Comput. 13, 333–349 (2014).
-
- Amos, M., Dittrich, P., McCaskill, J. & Rasmussen, S. Biological and chemical information technologies. Procedia Comput. Sci. 7, 56–60 (2011).
-
- Watson, J. D. & Crick, F. H. C. Molecular structure of nucleic acids: a structure for deoxyribose nucleic acid. Nature 171, 737–738 (1953). - PubMed
-
- Simmel, F. C., Yurke, B. & Singh, H. R. Principles and applications of nucleic acid strand displacement reactions. Chem. Rev. 119, 6326–6369 (2019). - PubMed
-
- Zadeh, J. N. et al. NUPACK: analysis and design of nucleic acid systems. J. Comput. Chem. 32, 170–173 (2011). - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Miscellaneous