Liquid Biopsy Based on Cell-Free DNA and RNA
- PMID: 38346275
- DOI: 10.1146/annurev-bioeng-110222-111259
Liquid Biopsy Based on Cell-Free DNA and RNA
Abstract
This review delves into the rapidly evolving landscape of liquid biopsy technologies based on cell-free DNA (cfDNA) and cell-free RNA (cfRNA) and their increasingly prominent role in precision medicine. With the advent of high-throughput DNA sequencing, the use of cfDNA and cfRNA has revolutionized noninvasive clinical testing. Here, we explore the physical characteristics of cfDNA and cfRNA, present an overview of the essential engineering tools used by the field, and highlight clinical applications, including noninvasive prenatal testing, cancer testing, organ transplantation surveillance, and infectious disease testing. Finally, we discuss emerging technologies and the broadening scope of liquid biopsies to new areas of diagnostic medicine.
Keywords: cancer; cell-free DNA; cell-free RNA; clinical diagnostics; diagnostics; epigenetics; infectious disease; methylation; next-generation sequencing; oncology; prenatal.
Similar articles
-
Circulating cell-free nucleic acids and platelets as a liquid biopsy in the provision of personalized therapy for lung cancer patients.Lung Cancer. 2017 May;107:100-107. doi: 10.1016/j.lungcan.2016.04.026. Epub 2016 May 4. Lung Cancer. 2017. PMID: 27180141 Review.
-
Artificial intelligence and machine learning in cell-free-DNA-based diagnostics.Genome Res. 2025 Jan 22;35(1):1-19. doi: 10.1101/gr.278413.123. Genome Res. 2025. PMID: 39843210 Free PMC article. Review.
-
Highly sensitive fusion detection using plasma cell-free RNA in non-small-cell lung cancers.Cancer Sci. 2021 Oct;112(10):4393-4403. doi: 10.1111/cas.15084. Epub 2021 Aug 18. Cancer Sci. 2021. PMID: 34310819 Free PMC article.
-
Cell-free DNA and RNA-measurement and applications in clinical diagnostics with focus on metabolic disorders.Physiol Genomics. 2021 Jan 1;53(1):33-46. doi: 10.1152/physiolgenomics.00086.2020. Epub 2020 Dec 21. Physiol Genomics. 2021. PMID: 33346689 Review.
-
Liquid biopsies: DNA methylation analyses in circulating cell-free DNA.J Genet Genomics. 2018 Apr 20;45(4):185-192. doi: 10.1016/j.jgg.2018.02.007. Epub 2018 Mar 8. J Genet Genomics. 2018. PMID: 29706556 Review.
Cited by
-
Plasma cell-free RNA signatures of inflammatory syndromes in children.Proc Natl Acad Sci U S A. 2024 Sep 10;121(37):e2403897121. doi: 10.1073/pnas.2403897121. Epub 2024 Sep 6. Proc Natl Acad Sci U S A. 2024. PMID: 39240972 Free PMC article.
-
The Potential of cfDNA as Biomarker: Opportunities and Challenges for Neurodegenerative Diseases.J Mol Neurosci. 2025 Mar 13;75(1):34. doi: 10.1007/s12031-025-02317-8. J Mol Neurosci. 2025. PMID: 40080233 Free PMC article. Review.
-
Liquid biopsy - a narrative review with an update on current US governmental clinical trials targeting immunotherapy.Future Sci OA. 2025 Dec;11(1):2527598. doi: 10.1080/20565623.2025.2527598. Epub 2025 Aug 7. Future Sci OA. 2025. PMID: 40772765 Free PMC article. Review.
-
Evaluation of cfDNA fragmentation characteristics in plasma for the diagnosis of lung cancer: A prospective cohort study.Cancer Sci. 2025 Jan;116(1):248-256. doi: 10.1111/cas.16360. Epub 2024 Oct 28. Cancer Sci. 2025. PMID: 39466000 Free PMC article.
-
Inherently imperfect, inherently evolving - The pursuit of precision through biomarkers.Biomed J. 2025 Feb;48(1):100839. doi: 10.1016/j.bj.2025.100839. Epub 2025 Feb 25. Biomed J. 2025. PMID: 40015558 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources