Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2023 Nov 13:8:522.
doi: 10.12688/wellcomeopenres.20339.1. eCollection 2023.

The genome sequence of the Wasp Spider, Argiope bruennichi (Scopoli, 1772)

Liam M Crowley  1 , Finley Hutchinson  2 ; University of Oxford and Wytham Woods Genome Acquisition Lab; Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life programme; Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective; Tree of Life Core Informatics collective; Darwin Tree of Life Consortium
Affiliations

The genome sequence of the Wasp Spider, Argiope bruennichi (Scopoli, 1772)

Liam M Crowley et al. Wellcome Open Res. .

Abstract

We present a genome assembly from an individual female Argiope bruennichi (the Wasp Spider; Arthropoda; Arachnida; Araneae; Araneidae). The genome sequence is 1,778.4 megabases in span. Most of the assembly is scaffolded into 13 chromosomal pseudomolecules, including the X 1 and X 2 sex chromosomes. The mitochondrial genome has also been assembled and is 14.06 kilobases in length.

Keywords: Araneae; Argiope bruennichi; Wasp Spider; chromosomal; genome sequence.

PubMed Disclaimer

Conflict of interest statement

No competing interests were disclosed.

Figures

Figure 1.
Figure 1.. Photograph of the Argiope bruennichi (qqArgBrue1) specimen used for genome sequencing.
Figure 2.
Figure 2.. Genome assembly of Argiope bruennichi, qqArgBrue1.1: metrics.
The BlobToolKit Snailplot shows N50 metrics and BUSCO gene completeness. The main plot is divided into 1,000 size-ordered bins around the circumference with each bin representing 0.1% of the 1,778,398,216 bp assembly. The distribution of scaffold lengths is shown in dark grey with the plot radius scaled to the longest scaffold present in the assembly (151,336,912 bp, shown in red). Orange and pale-orange arcs show the N50 and N90 scaffold lengths (139,055,214 and 127,865,338 bp), respectively. The pale grey spiral shows the cumulative scaffold count on a log scale with white scale lines showing successive orders of magnitude. The blue and pale-blue area around the outside of the plot shows the distribution of GC, AT and N percentages in the same bins as the inner plot. A summary of complete, fragmented, duplicated and missing BUSCO genes in the arachnida_odb10 set is shown in the top right. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/Argiope%20bruennichi/dataset/CANOBD01/snail.
Figure 3.
Figure 3.. Genome assembly of Argiope bruennichi, qqArgBrue1.1: BlobToolKit GC-coverage plot.
Scaffolds are coloured by phylum. Circles are sized in proportion to scaffold length. Histograms show the distribution of scaffold length sum along each axis. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/Argiope%20bruennichi/dataset/CANOBD01/blob.
Figure 4.
Figure 4.. Genome assembly of Argiope bruennichi, qqArgBrue1.1: BlobToolKit cumulative sequence plot.
The grey line shows cumulative length for all scaffolds. Coloured lines show cumulative lengths of scaffolds assigned to each phylum using the buscogenes taxrule. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/Argiope%20bruennichi/dataset/CANOBD01/cumulative.
Figure 5.
Figure 5.. Genome assembly of Argiope bruennichi, qqArgBrue1.1: Hi-C contact map of the qqArgBrue1.1 assembly, visualised using HiGlass.
Chromosomes are shown in order of size from left to right and top to bottom. An interactive version of this figure may be viewed at https://genome-note-higlass.tol.sanger.ac.uk/l/?d=e6_6dMh-TI-b_f7lmn0Zjg.
See this image and copyright information in PMC

References

    1. Abdennur N, Mirny LA: Cooler: Scalable storage for Hi-C data and other genomically labeled arrays. Bioinformatics. 2020;36(1):311–316. 10.1093/bioinformatics/btz540 - DOI - PMC - PubMed
    1. Allio R, Schomaker‐Bastos A, Romiguier J, et al. : MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics. Mol Ecol Resour. 2020;20(4):892–905. 10.1111/1755-0998.13160 - DOI - PMC - PubMed
    1. Bee L, Oxford G, Smith H: Britain’s Spiders.2nd ed. Princeton University Press,2020. 10.1515/9780691211800 - DOI
    1. Bernt M, Donath A, Jühling F, et al. : MITOS: Improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 2013;69(2):313–319. 10.1016/j.ympev.2012.08.023 - DOI - PubMed
    1. British Arachnological Society: Spider and Harvestman Recording Scheme website: Summary for Argiope bruennichi. (Araneae).2023; [Accessed 12 October 2023]. Reference Source

LinkOut - more resources