Linear dichroism reveals the perpendicular orientation of DNA bases in the RecA and Rad51 recombinase filaments: A possible mechanism for the strand exchange reaction
- PMID: 38561319
- DOI: 10.1002/chir.23664
Linear dichroism reveals the perpendicular orientation of DNA bases in the RecA and Rad51 recombinase filaments: A possible mechanism for the strand exchange reaction
Abstract
Linear dichroism spectroscopy is used to investigate the structure of RecA family recombinase filaments (RecA and Rad51 proteins) with DNA for clarifying the molecular mechanism of DNA strand exchange promoted by these proteins and its activation. The measurements show that the recombinases promote the perpendicular base orientation of single-stranded DNA only in the presence of activators, indicating the importance of base orientation in the reaction. We summarize the results and discuss the role of DNA base orientation.
Keywords: DNA strand exchange; Rad51; RecA; Swi5‐Sfr1 protein; homologous recombination; linear dichroism (LD).
© 2024 Wiley Periodicals LLC.
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References
REFERENCES
-
- Norden B, Kubista M, Kurucsev T. Linear dichroism spectroscopy of nucleic acids. Q Rev Biophys. 1992;25(1):51‐170. doi:10.1017/S0033583500004728
-
- Takahashi M, Norden B. Linear dichroism measurements for the study of protein‐DNA interactions. Int J Mol Sci. 2023;24(22):16092. doi:10.3390/ijms242216092
-
- Bell JC, Kowalczykowski SC. RecA: regulation and mechanism of a molecular search engine. Trends Biochem Sci. 2016;41(6):491‐507. doi:10.1016/j.tibs.2016.04.002
-
- Shinohara A, Ogawa H, Matsuda Y, Ushio N, Ikeo K, Ogawa T. Cloning of human, mouse and fission yeast recombination genes homologous to RAD51 and recA. Nat Genet. 1993;4(3):239‐243. doi:10.1038/ng0793‐239
-
- Anand R, Beach A, Li K, Haber J. Rad51‐mediated double‐strand break repair and mismatch correction of divergent substrates. Nature. 2017;544(7650):377‐380. doi:10.1038/nature22046
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