Metagenome-assembled bacterial genomes from benthic microbial mats in ice-covered Lake Vanda, Antarctica

doi:10.1128/mra.01250-23

. 2024 May 9;13(5):e0125023.

doi: 10.1128/mra.01250-23. Epub 2024 Apr 8.

Metagenome-assembled bacterial genomes from benthic microbial mats in ice-covered Lake Vanda, Antarctica

Tyler Powell^{1

2}, Dawn Y Sumner¹, Anne D Jungblut³, Ian Hawes⁴, Tyler Mackey⁵, Christen Grettenberger^{1

6}

Affiliations

¹ Department of Earth and Planetary Sciences, University of California, Davis, USA.
² Microbiology Graduate Group, University of California, Davis, USA.
³ Department of Sciences, The Natural History Museum, London, United Kingdom.
⁴ Coastal Marine Field Station, University of Waikato, Tauranga, New Zealand.
⁵ Department of Earth and Planetary Sciences, University of New Mexico, Albuquerque, New Mexico, USA.
⁶ Department of Environmental Toxicology, University of California, Davis, USA.

PMID: 38587419
PMCID: PMC11080526
DOI: 10.1128/mra.01250-23

Metagenome-assembled bacterial genomes from benthic microbial mats in ice-covered Lake Vanda, Antarctica

Tyler Powell et al. Microbiol Resour Announc. 2024.

. 2024 May 9;13(5):e0125023.

doi: 10.1128/mra.01250-23. Epub 2024 Apr 8.

Authors

Tyler Powell^{1

2}, Dawn Y Sumner¹, Anne D Jungblut³, Ian Hawes⁴, Tyler Mackey⁵, Christen Grettenberger^{1

6}

Affiliations

¹ Department of Earth and Planetary Sciences, University of California, Davis, USA.
² Microbiology Graduate Group, University of California, Davis, USA.
³ Department of Sciences, The Natural History Museum, London, United Kingdom.
⁴ Coastal Marine Field Station, University of Waikato, Tauranga, New Zealand.
⁵ Department of Earth and Planetary Sciences, University of New Mexico, Albuquerque, New Mexico, USA.
⁶ Department of Environmental Toxicology, University of California, Davis, USA.

PMID: 38587419
PMCID: PMC11080526
DOI: 10.1128/mra.01250-23

Abstract

We recovered 57 bacterial metagenome-assembled genomes (MAGs) from benthic microbial mat pinnacles from Lake Vanda, Antarctica. These MAGs provide access to genomes from polar environments and can assist in culturing and utilizing these Antarctic bacteria.

Keywords: Antarctica; metagenome-assembled genomes; microbial mat.

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Conflict of interest statement

The authors declare no conflict of interest.

References

1. Wade W. 2002. Unculturable bacteria—the uncharacterized organisms that cause oral infections. J R Soc Med 95:81–83. doi:10.1177/014107680209500207 - DOI - PMC - PubMed
1. Zhu D, Adebisi WA, Ahmad F, Sethupathy S, Danso B, Sun J. 2020. Recent development of extremophilic bacteria and their application in biorefinery. Front Bioeng Biotechnol 8:483. doi:10.3389/fbioe.2020.00483 - DOI - PMC - PubMed
1. Grettenberger CL, Sumner DY, Wall K, Brown CT, Eisen JA, Mackey TJ, Hawes I, Jospin G, Jungblut AD. 2020. A phylogenetically novel cyanobacterium most closely related to Gloeobacter. ISME J 14:2142–2152. doi:10.1038/s41396-020-0668-5 - DOI - PMC - PubMed
1. Sumner DY, Jungblut AD, Hawes I, Andersen DT, Mackey TJ, Wall K. 2016. Growth of elaborate microbial pinnacles in Lake Vanda, Antarctica. Geobiology 14:556–574. doi:10.1111/gbi.12188 - DOI - PubMed
1. Bushnell B. 2018. BBtools. Sourceforge.Net/projects/Bbmap/

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BII-2022126/National Science Foundation (NSF)

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[1] Wade W. 2002. Unculturable bacteria—the uncharacterized organisms that cause oral infections. J R Soc Med 95:81–83. doi:10.1177/014107680209500207 - DOI - PMC - PubMed

[2] Wade W. 2002. Unculturable bacteria—the uncharacterized organisms that cause oral infections. J R Soc Med 95:81–83. doi:10.1177/014107680209500207 - DOI - PMC - PubMed

[3] Zhu D, Adebisi WA, Ahmad F, Sethupathy S, Danso B, Sun J. 2020. Recent development of extremophilic bacteria and their application in biorefinery. Front Bioeng Biotechnol 8:483. doi:10.3389/fbioe.2020.00483 - DOI - PMC - PubMed

[4] Zhu D, Adebisi WA, Ahmad F, Sethupathy S, Danso B, Sun J. 2020. Recent development of extremophilic bacteria and their application in biorefinery. Front Bioeng Biotechnol 8:483. doi:10.3389/fbioe.2020.00483 - DOI - PMC - PubMed

[5] Grettenberger CL, Sumner DY, Wall K, Brown CT, Eisen JA, Mackey TJ, Hawes I, Jospin G, Jungblut AD. 2020. A phylogenetically novel cyanobacterium most closely related to Gloeobacter. ISME J 14:2142–2152. doi:10.1038/s41396-020-0668-5 - DOI - PMC - PubMed

[6] Grettenberger CL, Sumner DY, Wall K, Brown CT, Eisen JA, Mackey TJ, Hawes I, Jospin G, Jungblut AD. 2020. A phylogenetically novel cyanobacterium most closely related to Gloeobacter. ISME J 14:2142–2152. doi:10.1038/s41396-020-0668-5 - DOI - PMC - PubMed

[7] Sumner DY, Jungblut AD, Hawes I, Andersen DT, Mackey TJ, Wall K. 2016. Growth of elaborate microbial pinnacles in Lake Vanda, Antarctica. Geobiology 14:556–574. doi:10.1111/gbi.12188 - DOI - PubMed

[8] Sumner DY, Jungblut AD, Hawes I, Andersen DT, Mackey TJ, Wall K. 2016. Growth of elaborate microbial pinnacles in Lake Vanda, Antarctica. Geobiology 14:556–574. doi:10.1111/gbi.12188 - DOI - PubMed

[9] Bushnell B. 2018. BBtools. Sourceforge.Net/projects/Bbmap/

[10] Bushnell B. 2018. BBtools. Sourceforge.Net/projects/Bbmap/

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Metagenome-assembled bacterial genomes from benthic microbial mats in ice-covered Lake Vanda, Antarctica

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Metagenome-assembled bacterial genomes from benthic microbial mats in ice-covered Lake Vanda, Antarctica

Authors

Affiliations

Abstract

Conflict of interest statement

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References

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