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. 2024 Jul 2;23(7):924-938.
doi: 10.1158/1535-7163.MCT-23-0471.

Assessment of Patient-Derived Xenograft Growth and Antitumor Activity: The NCI PDXNet Consensus Recommendations

Affiliations

Assessment of Patient-Derived Xenograft Growth and Antitumor Activity: The NCI PDXNet Consensus Recommendations

Funda Meric-Bernstam et al. Mol Cancer Ther. .

Abstract

Although patient-derived xenografts (PDX) are commonly used for preclinical modeling in cancer research, a standard approach to in vivo tumor growth analysis and assessment of antitumor activity is lacking, complicating the comparison of different studies and determination of whether a PDX experiment has produced evidence needed to consider a new therapy promising. We present consensus recommendations for assessment of PDX growth and antitumor activity, providing public access to a suite of tools for in vivo growth analyses. We expect that harmonizing PDX study design and analysis and assessing a suite of analytical tools will enhance information exchange and facilitate identification of promising novel therapies and biomarkers for guiding cancer therapy.

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Conflict of interest statement

F. Meric-Bernstam reports personal fees from AbbVie, Aduro BioTech Inc., Alkermes, AstraZeneca, Daiichi Sankyo Co. Ltd., Calibr (a division of Scripps Research), DebioPharm, Ecor1 Capital, eFFECTOR Therapeutics, F. Hoffman-La Roche Ltd., GT Apeiron, Genentech Inc., Harbinger Health, IBM Watson, Incyte, Infinity Pharmaceuticals, Jackson Laboratory, Kolon Life Science, LegoChem Bio, Lengo Therapeutics, Menarini Group, OrigiMed, PACT Pharma, Parexel International, Pfizer Inc., Protai Bio Ltd, Samsung Bioepis, Seattle Genetics Inc., Tallac Therapeutics, Tyra Biosciences, Xencor, Zymeworks, and Black Diamond, Biovica, Eisai, FogPharma, Immunomedics, Inflection Biosciences, Karyopharm Therapeutics, Loxo Oncology, Mersana Therapeutics, OnCusp Therapeutics, Puma Biotechnology Inc., Seattle Genetics, Sanofi, Silverback Therapeutics, Spectrum Pharmaceuticals, Theratechnologies, Zentalis, grants from Aileron Therapeutics, Inc. AstraZeneca, Bayer Healthcare Pharmaceutical, Calithera Biosciences Inc., Curis Inc., CytomX Therapeutics Inc., Daiichi Sankyo Co. Ltd., Debiopharm International, eFFECTOR Therapeutics, Genentech Inc., Guardant Health Inc., Klus Pharma, Takeda Pharmaceutical, Novartis, Puma Biotechnology Inc., and Taiho Pharmaceutical Co., and personal fees from Dava Oncology and other support from European Organisation for Research and Treatment of Cancer (EORTC), European Society for Medical Oncology (ESMO), Cholangiocarcinoma Foundation, Dava Oncology outside the submitted work. M.W. Lloyd reports grants from the NCI [HHS–NIH] during the conduct of the study. M.T. Lewis reports grants from NIH/NCI during the conduct of the study and being a founder of and limited partner in StemMed Ltd. and manager in StemMed Holdings LLC, its general partner, and being a founder of and equity stakeholder in Tvardi Therapeutics Inc. A.L. Welm reports grants from Aslan Pharmaceuticals during the conduct of the study and other support from Thunder Biotechnology and Modulus Therapeutics outside the submitted work, and the University of Utah may license the models described herein to for-profit companies, which may result in tangible property royalties to the university and members of the Welm labs who developed the models. D.A. Dean reports grants from Velsera (Seven Bridges) during the conduct of the study. X. Huang reports grants from the National Institutes of Health during the conduct of the study. B.E. Welm reports grants from NCI during the conduct of the study and has received royalties from licenses of previously developed PDX models issued by the University of Utah. The University of Utah may issue new licenses in the future at its discretion, which may result in additional royalties to the authors. N. Mitsiades reports grants from NCI during the conduct of the study. M.A. Davies reports grants from NCI during the conduct of the study; personal fees from Roche/Genentech, Pfizer, Novartis, BMS, Iovance, and Eisai; grants and personal fees from AMB Therapeutics; and grants from LEAD Pharm outside the submitted work. G.I. Shapiro reports grants and personal fees from Merck KGaA/EMD-Serono; grants from Tango Therapeutics, Bristo Myers Squibb, Pfizer, and Eli Lilly; personal fees from Bicycle Therapeutics, Boehringer Ingelheim, Concarlo Holdings, Zentalis, Kymera Therapeutics, Janssen, Xinthera, Syros, ImmunoMet, and Blueprint Medicines outside the submitted work; additionally, G.I. Shapiro has a patent for Dosage regimen for sapacitabine and seliciclib issued to G.I. Shapiro and Cyclacel Pharmaceuticals and a patent for Compositions and methods for predicting response and resistance to CDK4/6 inhibition issued to G.I. Shapiro and Liam Cornell. No disclosures were reported by the other authors.

Figures

Figure 1.
Figure 1.
Different growth metrics applied to four PDX experiments. Four PDX models were subjected to daily with a drug. The growth of treated tumors (blue) and control tumors (gray) is displayed using different metrics. A, Spider plots of individual tumor volumes. Calculated as follows: Tumor volume (mm3) = [tumor length × (tumor width)2]/2B). B, Growth curves representing average tumor volumes. C, Spider plots of changes in tumor volume. Calculated as follows: % tumor volume change = ΔVt=Vt-V0V0×100. D, Growth curves representing average changes in tumor volume. E, Waterfall plots of changes in tumor volume on day 21. Calculated at day 21 as follows: % tumor volume change = ΔVt=Vt-V0V0×100. F, Waterfall plots of changes in tumor volume classified by response status. Objective responses: gray, PD (≥20% growth); dark blue, PR (≤30% tumor regression); light blue, stable disease (nonPD, nonPR). Scales capped at 200% to better show response range. G, Area under the tumor (AUCs) for tumor volume. The area under the tumor growth curve from baseline t0 up to time t ÷ t.
Figure 2.
Figure 2.
Additional metrics used to display tumor volume and antitumor activity. A, comparison of average changes in tumor volume. B, Log2 proportional changes in tumor volume. C, Scaled average changes in tumor volume. The tumor volumes range from −100% (complete regression) to 100% (endpoint). Tumor volume four times the baseline volume was chosen as the maximum growth endpoint. D, Event-free Survival. EFS is defined as the time until the tumor volume increases by a multiple of δ or reaches a certain volume cutoff. Tumor doubling (EFS2) was selected as an event. For example, min(τ:ΔVτδ×100); δ=1 corresponds to time until tumor doubles in size (EFS2).
Figure 3.
Figure 3.
Combination therapy testing. The panels show the effects of treatment of PDXs with single agents (blue and green) and combination therapies (red). The black lines represent untreated controls. The panels on the left show changes in tumor volume and panels on the right show scaled average changes in tumor volume. A, PDX treated with two therapeutic agents which achieved limited activity as monotherapy but achieved disease stabilization in combination therapy. B, Both drugs had monotherapy antitumor activity, but the combination led to tumor regression. C, Prolonged treatment with two drugs, demonstrating greater antitumor activity with the combination. D, Prolonged treatment with two agents alone and in combination, followed by treatment cessation, helping to delineate differences in durability of antitumor activity. E, A PDX experiment in which the combination therapy had significant antitumor activity was primarily driven by one agent without potentiation of the antitumor activity by the combination. F, PDX experiment here shows limited single-agent activity for each therapy with slightly more growth inhibition with the combination but still with continued tumor growth.
Figure 4.
Figure 4.
Comparison of the antitumor activity in four PDX models (A) waterfall plot of the average tumor volume changes at day 21. B, Graph of tumor volume T/C ratios. C, Hybrid tumor regression/growth inhibition plot of T/C ratios and tumor regression. The average percent decrease in tumor volume (TV) is shown for PDXs with tumor regression, whereas the T/C ratios are shown for PDXs with tumor growth above baseline volume (D) Log2 fold change in tumor volumes. E, Objective response classification in different PDX models. Gray, PD (≥20% tumor growth); dark blue, PR (≤30% tumor regression); light blue, stable disease (SD; nonPD, nonPR). F, AUCs based on average tumor volumes (left) and scaled (right).

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