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. 2024 Oct 1;116(4):807-815.
doi: 10.1093/jleuko/qiae087.

N6-methyladenosine promotes TNF mRNA degradation in CD4+ T lymphocytes

Ellen C N van Vroonhoven  1 , Lucas W Picavet  1 , Rianne C Scholman  1 , Lyanne J P M Sijbers  1 , Corlinda R E Kievit  1 , Noortje A M van den Dungen  2 , Michal Mokry  2 , Anouk Evers  3 , Robert J Lebbink  3 , Enric Mocholi  4   5 , Paul J Coffer  4   5 , Jorg J A Calis  1 , Sebastiaan J Vastert  1   6 , Jorg van Loosdregt  1
Affiliations

N6-methyladenosine promotes TNF mRNA degradation in CD4+ T lymphocytes

Ellen C N van Vroonhoven et al. J Leukoc Biol. .

Abstract

N6-methyladenosine (m6A) is a RNA modification that can regulate post-transcriptional processes including RNA stability, translation, splicing, and nuclear export. In CD4+ lymphocytes, m6A modifications have been demonstrated to play a role in early differentiation processes. The role of m6A in CD4+ T cell activation and effector function remains incompletely understood. To assess the role of m6A in CD4+ T lymphocyte activation and function, we assessed the transcriptome-wide m6A landscape of human primary CD4+ T cells by methylated RNA immunoprecipitation sequencing. Stimulation of the T cells impacted the m6A pattern of hundreds of transcripts including tumor necrosis factor (TNF). m6A methylation was increased on TNF messenger RNA (mRNA) after activation, predominantly in the 3' untranslated region of the transcript. Manipulation of m6A levels in primary human T cells, the directly affected the expression of TNF. Furthermore, we identified that the m6A reader protein YTHDF2 binds m6A-methylated TNF mRNA, and promotes its degradation. Taken together, this study demonstrates that TNF expression in CD4+ T lymphocytes is regulated via m6A and YTHDF2, thereby providing novel insight into the regulation of T cell effector functions.

Keywords: RNA methylation; adaptive immunity; epitranscriptomics; t cell activation; tumor necrosis factor.

Plain language summary

T helper cells are immune cells of the adaptive immune system. These cells are activated by antigen presenting cells that have engulfed invading pathogens. When the T helper cell is activated, it will produce and excrete signaling molecules (cytokines) that activate other immune cells in order to eradicate these pathogens. Cytokines are formed after translation of RNA molecules that encode for these cytokines. In this study it was found that a modification (N6-methyladenosine) on RNA molecules is involved in the regulation of the life cycle of these RNA molecules. It was found that the degradation of RNA encoding for cytokine tumor necrosis factor (TNF) was mediated through N6-methyladenosine and its “reader” protein YTHDF2 in activated T helper cells. As TNF promotes inflammation, reduction of TNF production through this mechanism dampens the immune response and therefore prevents chronic inflammation.

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Conflict of interest statement

Conflict of interest statement. None declared.

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